LOCUS AK298856 1906 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ51047 complete cds, highly similar to Sorting
nexin-17.
ACCESSION AK298856
VERSION AK298856.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1906)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1906
/cell_line="NT2"
/cell_type="teratocarcinoma"
/clone="NT2NE2013239"
/clone_lib="NT2NE2"
/db_xref="H-InvDB:HIT000493480"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="mRNA from NT2 neuron after the differentiation of
NT2 neuronal precursor cells."
/organism="Homo sapiens"
CDS 728..1498
/codon_start=1
/note="highly similar to Sorting nexin-17"
/protein_id="BAG60979.1"
/transl_table=1
/translation="MENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKE
FLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVT
RMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSI
CLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLESPDATRESMVKL
SSKLSAVSLRGIGSPSTDASASDVHGNFAFEGIGDEDL"
BASE COUNT 402 a 509 c 565 g 430 t
ORIGIN
1 acatcggatc gcagggctcc caaaatggcg agtgaggctg cggggactcg ctgagcagcg
61 gagggggagc gtgcagagcc gctgcggccc tcacagtccg gagcccggcc gtgccgtgcc
121 gtagggaaca tgcacttttc cattcccgaa accgagtccc gcagcgggga cagcggcggc
181 tccgcctacg tggcctataa cattcacgtg aatggagtcc tgcactgtcg ggtgcgctac
241 agccagctcc tggggctgca cgagcagttc tatagactgg actcacctag atggcagcca
301 agggtggggc aggtgaagaa tttatgcaaa cagtgagtga gttcggcaag acccattgct
361 tgggagcagc gagactttca acagtttcct gcgtcgggca caacaggaga cacagcaggt
421 ccccacagag gaagtgtcct tggaagtgct gctcagcaac gggcagaaag ttctggtcaa
481 cgtgctaact tcagatcaga ctgaggatgt cctggaggct gtagctgcaa agctggatct
541 tccagatgac ttgattggat actttagtct attcttagtt cgagaaaaag aggatggagc
601 cttttctttt gtacggaagt tgcaagagtt tgagctgcct tatgtgcctg tcaccagcct
661 tcggagtcaa gagtataaga ttgtgctaag gaagagttat tgggactctg cctatgatga
721 cgatgtcatg gagaaccggg ttggcctgaa cctgctttat gctcagacgg tatcagatat
781 tgagcgtggg tggatcttgg tcaccaagga acagcaccgg caactcaaat ctctgcaaga
841 gaaagtctcc aagaaggagt tcctgagact ggcccagacg ctgcggcact atggctactt
901 gcgctttgat gcctgtgtgg ctgacttccc agaaaaggac tgtcctgtgg tggtgagcgc
961 gggcaacagt gagctcagcc tgcagctccg cctgcctggc cagcaactcc gagaaggctc
1021 cttccgggtc acccgcatgc gatgctggcg ggtcacctcc tctgtaccat tgcccagtgg
1081 aagcacgagc agcccaggcc ggggccgggg tgaggtgcgc ctggaactgg cttttgaata
1141 cctcatgagc aaggaccggc tacagtgggt caccatcact agcccccagg ctatcatgat
1201 gagcatctgc ttgcagtcca tggttgatga actgatggtg aagaaatctg gcggcagtat
1261 caggaagatg ctgcgccggc gggtgggggg tactctgaga cgctcagaca gccagcaagc
1321 agtgaagtcc ccaccactgc ttgagtcacc tgatgccacc cgggagtcta tggtcaaact
1381 ctcaagtaag ctgagtgccg tgagcttgcg gggaattggc agtcccagca cagatgccag
1441 tgccagtgat gtccacggca atttcgcctt cgagggcatt ggagatgagg atctgtaatc
1501 tccactgctt ggatgtctgc cctctacccc agaggaattt acagaaactt gccctgtgcc
1561 tgtgtccccc atgctagggg cggaggggtc ttttccttct tctttcctac ctaccccttt
1621 tctcttggcc aggggcctcg tatcctacct ttccttgtcc cctgggctgg ctgcacagag
1681 gattgcccct tctcttttca gagctggccc tcgatgccaa attagcattt agtattttgc
1741 acaaagtcta agggaccatg gctgcctgcc ttggggagga accatagctc cctctgggcc
1801 gcttctggcc tcttggagcc atgggccaaa ggccaagggg atgggcagag gtctgtgttt
1861 ggtctggccc agttccccat cattaaactc agcctgactg ctgcct
//