LOCUS AK291218 3262 bp mRNA linear HUM 09-JAN-2008 DEFINITION Homo sapiens cDNA FLJ78644 complete cds, highly similar to Homo sapiens signal peptide, CUB domain, EGF-like 3 (SCUBE3), mRNA. ACCESSION AK291218 VERSION AK291218.1 KEYWORDS FLI_CDNA; oligo capping. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3262) AUTHORS Isogai,T. and Yamamoto,J. TITLE Direct Submission JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases. Contact:Takao Isogai Reverse Proteomics Research Institute; 1-9-11 Kaji-cho, Chiyoda-ku, Tokyo 101-0044, Japan E-mail :flj-cdna@nifty.com REFERENCE 2 AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K., Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y., Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M., Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T. TITLE NEDO human cDNA sequencing project JOURNAL Unpublished (2007) COMMENT Human cDNA sequencing project focused on splicing variants of mRNA in NEDO functional analysis of protein and research application project supported by Ministry of Economy, Trade and Industry, Japan; cDNA selection for complete cds sequencing: Reverse Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan (Hitachi) and Japan Biological Informatics Consortium, Japan (JBIC); cDNA complete cds sequencing: JBIC; cDNA library construction: Helix Research Institute supported by Japan Key Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing: Research Association for Biotechnology, Japan, Biotechnology Center, National Institute of Technology and Evaluation, Japan and HRI; cDNA mapping to human genome: Central Research Laboratory, Hitachi; evaluation and annotation: REPRORI. FEATURES Location/Qualifiers source 1..3262 /cell_line="NT2" /cell_type="teratocarcinoma" /clone="NT2RP8001841" /clone_lib="NT2RP8" /db_xref="H-InvDB:HIT000424015" /db_xref="taxon:9606" /mol_type="mRNA" /note="cloning vector: pME18SFL3" /note="mRNA from NT2 neuronal precursor cells after 5-weeks retinoic acid (RA) induction." /organism="Homo sapiens" CDS 79..3060 /codon_start=1 /note="highly similar to Homo sapiens signal peptide, CUB domain, EGF-like 3 (SCUBE3), mRNA" /protein_id="BAF83907.1" /transl_table=1 /translation="MGSGRVPGLCLLVLLVHARAAQYSKAAQDVDECVEGTDNCHIDA ICQNTPRSYKCICKSGYTGDGKHCKDVDECEREDNAGCVHDCVNIPGNYRCTCYDGFH LAHDGHNCLDVDECAEGNGGCQQSCVNMMGSYECHCREGFFLSDNQHTCIQRPEEGMN CMNKNHGCAHICRETPKGGIACECRPGFELTKNQRDCKLTCNYGNGGCQHTCDDTEQG PRCGCHIKFVLHTDGKTCIETCAVNNGGCDSKCHDAATGVHCTCPVGFMLQPDRKTCK DIDECRLNNGGCDHICRNTVGSFECSCKKGYKLLINERNCQDIDECSFDRTCDHICVN TPGSFQCLCHRGYLLYGITHCGDVDECSINRGGCRFGCINTPGSYQCTCPAGQGRLHW NGKDCTEPLKCQGSPGASKAMLSCNRSGKKDTCALTCPSRARFLPESENGFTVSCGTP SPRAAPARAGHNGNSTNSNHCHEAAVLSIKQRASFKIKDAKCRLHLRNKGKTEEAGRI TGPGGAPCSECQVTFIHLKCDSSRKGKGRRARTPPGKEVTRLTLELEAEVRAEETTAS CGLPCLRQRMERRLKGSLKMLRKSINQDRFLLRLAGLDYELAHKPGLVAGERAEPMES CRPGQHRAGTKCVSCPQGTYYHGQTEQCVPCPAGTFQEREGQLSCDLCPGSDAHGPLG ATNVTTCAGQCPPGQHSVDGFKPCQPCPRGTYQPEAGRTLCFPCGGGLTTKHEGAISF QDCDTKVQCSPGHYYNTSIHRCIRCAMGSYQPDFRQNFCSRCPGNTSTDFDGSTSVAQ CKNRQCGGELGEFTGYIESPNYPGNYPAGVECIWNINPPPKRKILIVVPEIFLPSEDE CGDVLVMRKNSSPSSITTYETCQTYERPIAFTARSRKLWINFKTSEANSARGFQIPYV TYDEDYEQLVEDIVRDGRLYASENHQEILKDKKLIKAFFEVLAHPQNYFKYTEKHKEM LPKSFIKLLRSKVSSFLRPYK" BASE COUNT 765 a 978 c 882 g 637 t ORIGIN 1 gcactctccg cctcgctccc cccccctccc ctggccgcga gaccggcccc ggcggctggg 61 ccgccagtag ctccagccat gggctcgggg cgcgtacccg ggctctgcct gcttgtcctg 121 ctggtccacg cccgcgccgc ccagtacagc aaagccgcgc aagatgtgga tgagtgtgtg 181 gaggggactg acaactgcca catcgatgct atctgccaga acaccccgag gtcatacaag 241 tgcatctgca agtctggcta cacaggggac ggcaaacact gcaaagacgt ggatgagtgc 301 gagcgagagg ataatgcagg ttgtgtgcat gactgtgtca acatccctgg caattaccgg 361 tgtacctgct atgatggatt ccacctggca catgacggac acaactgtct ggatgtggac 421 gagtgtgccg agggcaacgg cggctgtcag cagagctgtg tcaacatgat gggcagctat 481 gagtgccact gccgggaagg cttcttcctc agcgacaacc agcatacctg tatccagcgg 541 ccagaagaag gaatgaattg catgaacaag aaccacggct gtgcccacat ttgccgggag 601 acacccaagg ggggtattgc ctgtgaatgc cgtcctggct ttgagcttac caagaaccaa 661 cgggactgta aattgacatg caactatggt aacggcggct gccagcacac gtgtgatgac 721 acagagcagg gtccccggtg cggctgccat atcaagttcg tgctccatac cgacgggaag 781 acatgcatcg agacctgtgc tgtcaacaac gggggctgtg acagtaagtg ccatgatgca 841 gcgactggtg tccactgcac ctgccctgtg ggcttcatgc tgcagccaga caggaagacg 901 tgcaaagata tagatgagtg ccgcttaaac aacgggggct gtgaccatat ttgccgcaac 961 acagtgggca gcttcgaatg cagttgcaag aaaggctata agcttctcat caatgagagg 1021 aactgccagg atatagacga gtgttccttt gatcgaacct gtgaccacat atgtgtcaac 1081 acaccaggaa gcttccagtg tctctgccat cgtggctacc tgttgtatgg tatcacccac 1141 tgtggggatg tggatgaatg cagcatcaac cggggaggtt gccgctttgg ctgcatcaac 1201 actcctggca gctaccagtg tacctgccca gcaggccagg gtcggctgca ctggaatggc 1261 aaagattgca cagagccact gaagtgtcag ggcagtcctg gagcctcgaa agccatgctc 1321 agctgcaacc ggtctggcaa gaaggacacc tgtgccctga cctgtccctc cagggcccga 1381 tttttgccag agtctgagaa tggcttcacg gtgagctgtg ggacccccag ccccagggct 1441 gctccagccc gagctggcca caatgggaac agcaccaact ccaaccactg ccatgaggct 1501 gcagtgctgt ccattaaaca acgggcctcc ttcaagatca aggatgccaa atgccgtttg 1561 cacctgcgaa acaaaggcaa aacagaggag gctggcagaa tcacagggcc aggtggtgcc 1621 ccctgctctg aatgccaggt caccttcatc caccttaagt gtgactcctc tcggaagggc 1681 aagggccgac gggcccggac ccctccaggc aaagaggtca caaggctcac cctggaactg 1741 gaggcagagg tcagagccga agaaaccaca gccagctgtg ggctgccctg cctccgacag 1801 cgaatggaac ggcggctgaa aggatccctg aagatgctca gaaagtccat caaccaggac 1861 cgcttcctgc tgcgcctggc aggccttgat tatgagctgg cccacaagcc gggcctggta 1921 gccggggagc gagcagagcc gatggagtcc tgtaggcccg ggcagcaccg tgctgggacc 1981 aagtgtgtca gctgcccgca gggaacgtat taccacggcc agacggagca gtgtgtgcca 2041 tgcccagcgg gcaccttcca ggagagagaa gggcagctct cctgcgacct ttgccctggg 2101 agtgatgccc acgggcctct tggagccacc aacgtcacca cgtgtgcagg tcagtgccca 2161 cctggccaac actctgtaga tgggttcaag ccctgtcagc catgcccacg tggcacctac 2221 caacctgaag caggacggac cctatgcttc ccttgtggtg ggggcctcac caccaagcat 2281 gaaggggcca tttccttcca agactgtgac accaaagtcc agtgctcccc agggcactac 2341 tacaacacca gcatccaccg ctgtattcgc tgtgccatgg gctcctatca gcccgacttc 2401 cgtcagaact tctgcagccg ctgtccagga aacacaagca cagactttga tggctctacc 2461 agtgtggccc aatgcaagaa tcgtcagtgt ggtggggagc tgggtgagtt cactggctat 2521 attgagtccc ccaactaccc gggcaactac ccagctggtg tggagtgcat ctggaacatc 2581 aaccccccac ccaagcgcaa gatccttatc gtggtaccag agatcttcct gccatctgag 2641 gatgagtgtg gggacgtcct cgtcatgaga aagaactcat ccccatcctc cattaccact 2701 tatgagacct gccagaccta cgagcgtccc attgccttca ctgcccgttc caggaagctc 2761 tggatcaact tcaagacaag cgaggccaac agcgcccgtg gcttccagat tccctatgtt 2821 acctatgatg aggactatga gcagctggta gaagacattg tgcgagatgg ccggctctat 2881 gcctctgaaa accaccagga gattttaaag gacaagaagc tcatcaaggc cttctttgag 2941 gtgctagccc acccccagaa ctacttcaag tacacagaga aacacaagga gatgctgcca 3001 aaatccttca tcaagctgct ccgctccaaa gtttccagct tcctgaggcc ctacaaatag 3061 taaccctagg ctcagagacc caatttttta agcccccaga ctccttagcc ctcagagccg 3121 gcagccccct accctcagac aaggaactct ctcctctctt tttggaggga aaaaaaaaat 3181 atcactacac aaaccaggca ctctcccttt ctgtctttct agtttccttt ccttgtctct 3241 ctctgcctgc ctctctactg tt //