LOCUS AK290146 2667 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ78375 complete cds, highly similar to Homo
sapiens cold shock domain containing E1, RNA-binding (CSDE1),
transcript variant 1, mRNA.
ACCESSION AK290146
VERSION AK290146.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2667)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2667
/clone="BRTHA2031892"
/clone_lib="BRTHA2"
/db_xref="H-InvDB:HIT000422943"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="thalamus"
CDS 59..2455
/codon_start=1
/note="highly similar to Homo sapiens cold shock domain
containing E1, RNA-binding (CSDE1), transcript variant 1,
mRNA"
/protein_id="BAF82835.1"
/transl_table=1
/translation="MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSE
RQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNG
QVVCAVPHNLESKSPAAPGQSPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINF
VIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKG
DLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPS
KNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNI
EVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDGNQLHIADEVE
FTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGK
EKEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVR
LLGRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSL
SKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIVEE
GDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVK
DQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVCE
GPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID
"
BASE COUNT 801 a 516 c 650 g 700 t
ORIGIN
1 tacgtaccgg gccgtgctgc ttatggcggc gctggagagg gggcgctgag ctgttgggat
61 gagctttgat ccaaaccttc tccacaacaa tggacataat gggtacccta atggtacttc
121 agcagcactg cgtgaaactg gggttattga aaaactgtta acctcttacg gatttattca
181 gtgttcagaa cgtcaagcta gacttttctt ccactgttca cagtataatg gcaacctgca
241 agacttaaaa gtaggagatg atgttgaatt tgaagtatca tcggaccgac ggactgggaa
301 acccattgct gttaaactgg tgaagataaa acaagaaatc ctcccggaag aacgaatgaa
361 tggacaagtt gtgtgcgctg ttcctcacaa cttagagagt aaatctccag ctgccccggg
421 tcagagtcca acagggagtg tatgctacga acgtaatggg gaagtgtttt atctgactta
481 cacccctgaa gatgtcgaag ggaacgttca gctggaaact ggagataaaa taaactttgt
541 aattgataac aataaacata ctggtgctgt aagtgctcgc aacattatgc tgttgaaaaa
601 gaaacaagcc cgctgtcagg gagtagtttg tgccatgaag gaggcatttg gctttattga
661 aagaggtgat gttgtaaaag agatattctt tcactatagt gaatttaagg gtgacttaga
721 aaccttacag cctggcgatg atgtggaatt cacaatcaag gacagaaatg gtaaagaagt
781 tgcaacagat gtcagactat tgcctcaagg aacagtcatt tttgaagata tcagcattga
841 acattttgaa ggaactgtaa ccaaagttat cccaaaagta cccagtaaaa accagaatga
901 cccattgcca ggacgcatca aagttgactt tgtgatccct aaagaacttc cctttggaga
961 caaagatacg aaatccaagg tgaccctgct ggaaggtgac catgttaggt ttaatatttc
1021 aacagaccga cgtgacaaat tagagcgagc aaccaatata gaagttctgt caaatacatt
1081 tcagttcact aatgaagccc gagaaatggg tgtgattgct gccatgagag atggttttgg
1141 tttcatcaag tgtgtggatc gtgatgttcg tatgttcttc cacttcagtg aaattctgga
1201 tgggaaccag ctccatattg cagatgaagt agagtttact gtggttcctg atatgctctc
1261 tgctcaaaga aatcatgcta ttaggattaa aaaacttccc aagggcacgg tttcatttca
1321 ttcccattca gatcaccgtt ttctgggcac ggtagaaaaa gaagccactt tttccaatcc
1381 taaaaccact agcccaaata aaggcaaaga gaaggaggct gaggatggca ttattgctta
1441 tgatgactgt ggggtgaaac tgactattgc ttttcaagcc aaggatgtgg aaggatctac
1501 ttctcctcaa ataggagata aggttgaatt tagtattagt gacaaacaga ggcctggaca
1561 gcaggttgca acttgtgtgc gacttttagg tcgtaattct aactccaaga ggctcttggg
1621 ttatgtggca actctgaagg ataattttgg atttattgaa acagccaatc atgataagga
1681 aatctttttc cattacagtg agttctctgg tgatgttgat agcctggaac tgggggacat
1741 ggtcgagtat agcttgtcca aaggcaaagg caacaaagtc agtgcagaaa aagtgaacaa
1801 aacacactca gtgaatggca ttactgagga agctgatccc accatttact ctggcaaagt
1861 aattcgcccc ctgaggagtg ttgatccaac acagactgag taccaaggaa tgattgagat
1921 tgtggaggag ggcgatatga aaggtgaggt ctatccattt ggcatcgttg ggatggccaa
1981 caaaggggat tgcctgcaga aaggggagag cgtcaagttc caattgtgtg tcctgggcca
2041 aaatgcacaa actatggctt acaacatcac acccctgcgc agggccacag tggaatgtgt
2101 gaaagatcag tttggcttca ttaactatga agtaggagat agcaagaagc tctttttcca
2161 tgtgaaagaa gttcaggatg gcattgagct acaggcagga gatgaggtgg agttctcagt
2221 gattcttaat cagcgcactg gcaagtgcag cgcctgtaat gtttggcgag tctgtgaggg
2281 ccccaaggct gttgcagctc ctcgacctga tcggttggtc aatcgcttga agaatatcac
2341 tctggatgat gccagtgctc ctcgcctaat ggttcttcgt cagccaaggg gaccagataa
2401 ctcaatgggg tttggtgcag aaagaaagat ccgtcaagct ggtgtcattg actaaccaca
2461 tccacaaagc acaccattaa tccactatga tcaagttggg gggaatctgg tgaagggttc
2521 tgaatatctc cctcttcatc cctcccgaaa tctggaatac ttattctatt gagctattac
2581 accagtttta acaccttcct cgtgttatgt ttaaaaaaat aaataaattt aagaaaacca
2641 ttttaaataa tgcacagttg cagcctg
//