LOCUS AK165618 1436 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus RCB-1283 B16 melanoma cDNA, RIKEN full-length
enriched library, clone:G430067C03 product:pyrroline-5-carboxylate
reductase family, member 2, full insert sequence.
ACCESSION AK165618
VERSION AK165618.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1436)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=G430067C03
FEATURES Location/Qualifiers
source 1..1436
/cell_line="RCB-1283 B16 melanoma"
/clone="G430067C03"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:G430067C03"
/db_xref="MGI:3560692"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
CDS 166..1128
/codon_start=1
/note="putative"
/note="pyrroline-5-carboxylate reductase family, member 2
(MGD|MGI:1277956 GB|NM_133705, evidence: BLASTN, 100%,
match=1426)"
/protein_id="BAE38298.1"
/transl_table=1
/translation="MSVGFIGAGQLACALARGFTAAGVLSAHKIIASSPDMDLPTVSA
LRRMGVNLTRSNKDTVRHSDVLFLAVKPHIIPFILDEIGADVQERHIVVSCAAGVTIS
SVEKKLMAFQPAPKVIRCMTNTPVVVREGATVYATGTHALVEDGKLLEQLMSSVGFCT
EVEEDLIDAITGLSGSGPAYAFMALDALADGGVKMGVPRRLAVRLGAQALLGAAKMLL
DSEDHPGQLKDNVCSPGGATIHALHFLESGGFRSLLINAVEASCIRTRELQSMADQEK
VSPAALKKTLLDRVKLESPTVSTLAPPSSGKLLTRNPAQGSKKE"
BASE COUNT 280 a 408 c 462 g 286 t
ORIGIN
1 cgggggggat gctctgggat acttggggcc tctctagcag ttcatctggt gcatcccggt
61 ttgaaagctg ttccgagcaa ttcgggtcca tctttttcca cgcgcggaca ctgaccccgg
121 gatccccaga gtccccggat cggcgctcgc cgggatcctg cggccatgag cgtgggtttc
181 atcggcgcag gccagctggc ctgtgctctg gcgcggggct tcacggccgc gggcgtcctg
241 tcggctcaca agataatagc cagctccccg gatatggacc tgcccacggt gtctgcgctc
301 aggaggatgg gtgtgaatct gacccgaagc aataaggaca ctgtgcggca cagcgacgtc
361 ctgttcctgg ctgtgaagcc ccacatcatc cccttcatcc tggatgagat tggagccgac
421 gtgcaggaga ggcacatcgt ggtctcctgt gcagccgggg tcaccatcag ttctgtggag
481 aagaagctga tggctttcca gccggccccc aaagtgatcc gctgcatgac caacacgccc
541 gtggtggtcc gagagggggc caccgtgtat gccacgggca cccatgctct ggtggaagac
601 ggcaagcttt tggagcagct gatgagcagt gtgggcttct gcacagaggt ggaggaagac
661 ctcattgatg ctatcaccgg gctcagcggc agcgggcctg cctatgcatt catggccctg
721 gacgccctgg cagatggtgg ggtgaagatg ggcgtgccgc ggcgcctggc ggtcagactg
781 ggagctcagg cgttgctggg agcagctaag atgctgctgg actcagagga ccatccaggc
841 cagctcaagg acaacgtctg ctcccctggg ggggccacca tccatgccct gcacttcctg
901 gagagtgggg gcttccgctc tctgctcatc aatgcggttg aggcctcctg tatccgaacc
961 agagaactgc agtccatggc tgaccaagaa aaggtgtctc ctgctgccct taagaagacc
1021 cttctggaca gagtgaagct ggagtcaccc acggtgtcca cgctggcccc acccagctca
1081 gggaaactcc ttacaagaaa ccccgcccag ggaagcaaga aggagtgagg aggactctgt
1141 agggtgtccc tgtcccctgt agtacaggga ggggcaggct caggtctggg ggtgaagctg
1201 cttacatctg ttcacctggt gccaccgagt ccttctcctg tcccgtggca gaaggtgctc
1261 tgaagaggcg gctgatgcca gaagtcagca tgcctctctg agagaggtgg aggccttaga
1321 gttagcatcc ccctcagcgg aagtctgtgg agagctttag ttagatccga ggctgcttca
1381 gattgatctc caggtgaggt gagaggaaac gggaatcctc tgaattaaaa acacgc
//