LOCUS AK155002 1586 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630115H21 product:programmed cell death 1 ligand 2, full insert sequence. ACCESSION AK155002 VERSION AK155002.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1586) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Tissues were provided by Dr. John Todd (Dept. of Medical Genetics Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome Trust/MRC building Addenbrookes Hospital Cambridge) whose assistance we gratefully acknowledge. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=F630115H21 FEATURES Location/Qualifiers source 1..1586 /cell_type="NOD-derived CD11c +ve dendritic cells" /clone="F630115H21" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:F630115H21" /db_xref="MGI:3554413" /db_xref="taxon:10090" /mol_type="mRNA" /organism="Mus musculus" /strain="NOD" CDS 177..920 /codon_start=1 /note="programmed cell death 1 ligand 2 (MGD|MGI:1930125 GB|AF142780, evidence: BLASTN, 100%, match=942)" /note="putative" /protein_id="BAE32986.1" /transl_table=1 /translation="MLLLLPILNLSLQLHPVAALFTVTAPKEVYTVDVGSSVSLECDF DRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRC LVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSV PANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRMEPKVP RTWPLHVFIPACTIALIFLAIVIIQRKRI" BASE COUNT 389 a 400 c 391 g 406 t ORIGIN 1 ggttgtctcc ttctgtctcc caactagaga gaacacactt acggctcctg tcccgggcag 61 gtttggttgt cggtgtgatt ggcttccagg gaacctgata caaggagcaa ctgtgtgctg 121 ccttttctgt gtctttgctt gaggagctgt gctgggtgct gatattgaca cagaccatgc 181 tgctcctgct gccgatactg aacctgagct tacaacttca tcctgtagca gctttattca 241 ccgtgacagc ccctaaagaa gtgtacaccg tagacgtcgg cagcagtgtg agcctggagt 301 gcgattttga ccgcagagaa tgcactgaac tggaagggat aagagccagt ttgcagaagg 361 tagaaaatga tacgtctctg caaagtgaaa gagccaccct gctggaggag cagctgcccc 421 tgggaaaggc tttgttccac atccctagtg tccaagtgag agattccggg cagtaccgtt 481 gcctggtcat ctgcggggcc gcctgggact acaagtacct gacggtgaaa gtcaaagctt 541 cttacatgag gatagacact aggatcctgg aggttccagg tacaggggag gtgcagctta 601 cctgccaggc tagaggttat cccctagcag aagtgtcctg gcaaaatgtc agtgttcctg 661 ccaacaccag ccacatcagg acccccgaag gcctctacca ggtcaccagt gttctgcgcc 721 tcaagcctca gcctagcaga aacttcagct gcatgttctg gaatgctcac atgaaggagc 781 tgacttcagc catcattgac cctctgagtc ggatggaacc caaagtcccc agaacgtggc 841 cacttcatgt tttcatcccg gcctgcacca tcgctttgat cttcctggcc atagtgataa 901 tccagagaaa gaggatctag gggaagctgt attacggaag aagatctgga cctgcggtct 961 tgggagttgg aaggatctga tgggaaaccc tcaagagact tctggactca aagtgagaat 1021 cttgcaggac ctgccatttg cacttttgaa ccctttggac ggtgacccag ggctccgaag 1081 aggagcttgt aagactgaca atcttccctc tgtctcaaga ctctctgaac agcaagaccc 1141 caatggcact ttagacttac ccctgggatc ctggacccca gtgagggcct aaggctccta 1201 atgactttca gggtgagaac aaaaggaatt gctctccgcc ccacccccac ctcctgcttt 1261 ccgcagggag acatggaaat tcccagttac taaaatagat tgtcaataga gttatttata 1321 gccctcattt cctccgggga cttggaagct tcagacaggg tttttcataa acaaagtcat 1381 aactgatgtg ttttacagca tcctagaatc ctggcagcct ctgaagttct aattaactgg 1441 aagcatttaa gcaacacgtt aagtaccccc actgtggtat ttgtttctac ttttctgttt 1501 ttaaagtgtg agtcacaagg taattgttgt aacctgtgat atcactgttt cttgtgtctc 1561 ttctttcaac tacatctttt aaaacg //