LOCUS AK153966 3086 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430014F19 product:CD4 antigen, full insert sequence. ACCESSION AK153966 VERSION AK153966.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3086) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=E430014F19 FEATURES Location/Qualifiers source 1..3086 /cell_type="thymic cells" /clone="E430014F19" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:E430014F19" /db_xref="MGI:3551318" /db_xref="taxon:10090" /dev_stage="2 days neonate" /mol_type="mRNA" /organism="Mus musculus" /strain="NOD" /tissue_type="thymus" CDS 170..1543 /codon_start=1 /note="CD4 antigen (MGD|MGI:88335 GB|BC039137, evidence: BLASTN, 99%, match=3065)" /note="putative" /protein_id="BAE32284.1" /transl_table=1 /translation="MCRAISLRRLLLLLLQLSQLLAVTQGKTLVLGKEGESAELPCES SQKKITVFTWKFSDQRKILGQHGKGVLIRGGSPSQFDRFDSKKGAWEKGSFPLIINKL KMEDSQTYICELENRKEEVELWVFKVTFSPGTSLLQGQSLTLTLDSNSKVSNPLTECK HKKGKVVSGSKVLSMSNLRVQDSDFWNCTVTLDQKKNWFGMTLSVLGFQSTAITAYKS EGESAEFSFPLNFAEENGWGELMWKAEKDSFFQPWISFSIKNKEVSVQKSTKDLKLQL KETLPLTLKIPQVSLQFAGSGNLTLTLDKGTLHQEVNLVVMKVAQLNNTLTCEVMGPT SPKMRLTLKQENQEARVSEEQKVVQVVAPETGLWQCLLSEGDKVKMDSRIQVLSRGVN QTVFLACVLGGSFGFLGFLGLCILCCVRCRHQQRQAARMSQIKRLLSEKKTCQCPHRM QKSHNLI" BASE COUNT 774 a 844 c 767 g 701 t ORIGIN 1 gattcattta cgaacatctg tgaaggcaaa gcaagactct cttcttcact aggtacctgt 61 ttgcaaagtc tcgagccctc atatacacac acctgtgcaa gaagcagagt gaaggaagga 121 ctggccagag gctcagattc ccaaccaaca agagctcaag gagaccacca tgtgccgagc 181 catctctctt aggcgcttgc tgctgctgct gctgcagctg tcacaactcc tagctgtcac 241 tcaagggaag acgctggtgc tggggaagga aggggaatca gcagaactgc cctgcgagag 301 ttcccagaag aagatcacag tcttcacctg gaagttctct gaccagagga agattctggg 361 gcagcatggc aaaggtgtat taattagagg aggttcgcct tcgcagtttg atcgttttga 421 ttccaaaaaa ggggcatggg agaaaggatc gtttcctctc atcatcaata aacttaagat 481 ggaagactct cagacttata tctgtgagct ggagaacagg aaagaggagg tggagttgtg 541 ggtgttcaaa gtgaccttca gtccgggtac cagcctgttg caagggcaga gcctgaccct 601 gaccttggat agcaactcta aggtctctaa ccccttgaca gagtgcaaac acaaaaaggg 661 taaagttgtc agtggttcca aagttctctc catgtccaac ctaagggttc aggacagcga 721 cttctggaac tgcaccgtga ccctggacca gaaaaagaac tggttcggca tgacactctc 781 agtgctgggt tttcagagca cagctatcac ggcctataag agtgagggag agtcagcgga 841 gttctccttc ccactcaact ttgcagagga aaacgggtgg ggagagctga tgtggaaggc 901 agagaaggat tctttcttcc agccctggat ctccttctcc ataaagaaca aagaggtgtc 961 cgtacaaaag tccaccaaag acctcaagct ccagctgaag gaaacgctcc cactcaccct 1021 caagataccc caggtctcgc ttcagtttgc tggttctggc aacctgactc tgactctgga 1081 caaagggaca ctgcatcagg aagtgaacct ggtggtgatg aaagtggctc agctcaacaa 1141 tactttgacc tgtgaggtga tgggacctac ctctcccaag atgagactga ccctgaagca 1201 ggagaaccag gaggccaggg tctctgagga gcagaaagta gttcaagtgg tggcccctga 1261 gacagggctg tggcagtgtc tactgagtga aggtgataag gtcaagatgg actccaggat 1321 ccaggtttta tccagagggg tgaaccagac agtgttcctg gcttgcgtgc tgggtggctc 1381 cttcggcttt ctgggtttcc ttgggctctg catcctctgc tgtgtcaggt gccggcacca 1441 acagcgccag gcagcacgaa tgtctcagat caagaggctc ctcagtgaga agaagacctg 1501 ccagtgcccc caccggatgc agaagagcca taatctcatc tgagggccta ggccccacct 1561 gcagcccacc acctgcgtcc tgtctcatcg cccgaggcct ggggaccaga tgaatgtagc 1621 agacacgctg cctccggcct tctgctctcc tcttccacaa ccggccacgg tttccctccc 1681 tctgttccca agcctgtctg tctgcagagc ttgccctctg cgtttcagac actcaagcac 1741 accccatcag cttatttatt cttcgctgct gcctttctgc cagagcctcg gcccttctcg 1801 gactaaggtc ctggaacctt tttccagctg tctgcttgga tcaaagggca gtgtatagca 1861 cctggcacgg atggtgggac tggtgtctgg aaatacacag cacagtttac gagagggctc 1921 tgggaccaag ctgagtgggg cagggagggc cgggaggttg tgcatgtcac acatgaagca 1981 tgtcaggggc aaatgaagac tgagaggctg cgggagtcag cctcagcttc ccatgatgcc 2041 tgcttctctt ttgaatttgc aagaccagac tcacattcta accagtgcac caacacacat 2101 ccaagccaca cacctgtcca tatatccaaa cagcatatct taattcataa gccactttaa 2161 tgtcccaggc attcgaccct tacaaaaacc ttacaagtgg atgagcggta aaaagcctca 2221 tgaactgagt ggaaggagag gattaactct tgaaagttgt cccctatgta tgtaccatga 2281 ccctcatgtg tacacaacac acacacacac acacacacat acacacacga acacacgcat 2341 gttgcacaca tgcatgcacg ctgaaatcct agcaagctga cagtgatgac taagatggca 2401 gagataacca gtcatcccta gtgaaatgga acttggttga atgactaccc aaggttaccc 2461 agctaacaag tgctgatgtc agggccaacc cagggctcct gatccctaga gccaagccac 2521 tacatggaac acagggatga ataccacaca gatctctgga gctagttcca ggccctcggt 2581 atacacacac acacacacac acacacacac tggagcgcag cccctggcag agatcttgag 2641 aggatggagg agccattctg gtttcaaatc cctccttgat cactgctgtt ctcacccccc 2701 cctccttccc ccaaaaccct agttctctta gagtgaggct gggagagatg cacagagacc 2761 tgccgcagtg tgtgcagagc ctgggaagtg gaccatgctg gggtccttta tggagagagc 2821 attgtggcag gtggctgtgc cttccatcca ggaggtcagg ggtctaaggg ctctccctga 2881 gagtcttgat ctgtttctca tagatccaca gcctcctctg cctctgtcgt ttgcctgctt 2941 cagcacttcc ttcccctttt ttcctctttt cttcccagct ggcctcttct agaaacatcc 3001 cttccccact tctcttcatt attcacttct tatttttgcc cactccccac tcctgcttcc 3061 tgagctgaca gaaaaataaa ggctat //