LOCUS AK147105 2256 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus cDNA, RIKEN full-length enriched library,
clone:I920167P15 product:laminin, gamma 2, full insert sequence.
ACCESSION AK147105
VERSION AK147105.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2256)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=I920167P15
FEATURES Location/Qualifiers
source 1..2256
/clone="I920167P15"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:I920167P15"
/db_xref="MGI:3572297"
/db_xref="taxon:10090"
/mol_type="mRNA"
/note="pooled tissues: (dev_stage=16 days
embryo,tissue_type=heart,sex=mix),(dev_stage=16 days
embryo,tissue_type=kidney,sex=mix),(dev_stage=17 days
embryo,tissue_type=heart,sex=mix),(dev_stage=17 days
embryo,tissue_type=stomach,sex=mix),(dev_stage=17 days
embryo,tissue_type=kidney,sex=mix),(dev_stage=17 days
pregnant, adult,tissue_type=amnion,sex=female),
(dev_stage=13 days embryo,tissue_type=liver,sex=mix)"
/organism="Mus musculus"
CDS 310..717
/codon_start=1
/note="laminin, gamma 2 (MGD|MGI:99913 GB|NM_008485,
evidence: BLASTN, 99%, match=435)"
/note="putative"
/protein_id="BAE27677.1"
/transl_table=1
/translation="MPALWLSCCLGVALLLPAAQATSRREVCDCNGKSRQCVFDQELH
RQTGSGFRCLNCNDNTAGVHCERCREGFYRHRDRDRCLPCNCHSKGSLSAGCDNSGQC
RCKPGVTGQRCDRCQPGFHMLTDAGCTRDQGQL"
regulatory 2227..2232
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 2256
/note="putative"
BASE COUNT 555 a 586 c 540 g 575 t
ORIGIN
1 ggtgcccttg agactccctc gccccctccg gttttgagga aggggtggct gatatctaca
61 acctgagttc tgcccaggac caccccggga gagaacggct gtgtgtagcg gggtgcgggt
121 ggagggaggg gatatggcac attccagaag gatctctgga ccgcagcctc agtaccacgc
181 cctcggcggg gccaggactg agtcagggag aagagtcgat aaaacacctg atcgagggaa
241 aaggaaggca cagcagagcg aagactcggc gcccggcagg cacccgcagc ggcggagcgc
301 ggcccggcca tgcctgcgct ctggctcagc tgctgccttg gtgtcgcgct cctgctgccc
361 gcagcccagg ccacctccag gagggaagtc tgtgattgca atgggaagtc caggcaatgt
421 gtctttgatc aggagctcca tcgacagaca ggcagcgggt tccgttgcct caactgcaat
481 gacaatacag cgggggttca ctgcgagcgg tgcagggagg ggttttaccg acatcgagac
541 agagaccgct gcctaccctg caactgccac tcaaagggtt ccctcagtgc tggatgtgac
601 aactctggac aatgcaggtg taagccaggt gtgacaggac aaagatgtga ccgatgtcag
661 ccaggcttcc atatgctcac cgatgctgga tgcacccgag accaggggca actgtaagca
721 cctgcctgag tttaacaact cggggttgtt ttatctccat cagcccgtca ttgagggaag
781 aactgaagac aggaacatga agcagagacc ttggaggacc acgacctcct gagttacttt
841 ccatgtcatg ttcagctacc tttcttttct ttaaagattt atttatttta ttttatatat
901 gtgaggatac tgtagctgtc ttcagacaca ccagaagagt ccattggatc ccattacaga
961 tggttgtgag ccaccatgaa gttgctggga attgaactta gggcctctgg aagagcagtc
1021 agtgctctta acctctgagc catctctcca gccccagcta cctttctcat acagcccaaa
1081 cccacctgcc taggaatggt gttgcctact gtgggccagg ctctcttata ccagttacat
1141 gtcaagaaaa taccccatag gcttgcccac aagctattct catggaggta gttccctctt
1201 cccgggtgta agttgacaac caagattaat tgtcatagca tccttactcc accattgcta
1261 ttaccaaggg aataatgaca cccacatata cttttgtgac ttcttcatgt ggggctgttt
1321 aattttatca ttatacaaat actatataca actgggatta tcattacact cattttaata
1381 agaagatact taaaccatga aaaattcaaa tgcccaatgc tactggtaat gatagagccc
1441 gtttggagac ccagagattc ggcacctgga tgcatgcatt tggctttcct tggggaacca
1501 agagggacac agaggcttct cccccattcc aaccagggac ccactggacc tcagcaaact
1561 ttgtgtagaa gactttttct ctgcccaatt gctggctcct tttgtttgaa acacctgctt
1621 tccaccctca gattctttta ttgaaggagg actcagactg tcttccttca atgtacgctg
1681 cctatcacac agcaatcaca gaggtacaga gcttagaggt agcaggggga gtctggtggt
1741 gaataatttg ccagaaagaa aattggcaga ggaatttttg agagcaaggg aaaagctaac
1801 taaaccctct gggcttaaac tgcttcatct gctgacatca gcagcctgcc caatgtttct
1861 ggtaatgatg gaccctagac ttaacctgct ctcgttactt ttcttgacct agcaagaccc
1921 cagctgttgc ttttctagac ttaacctgct tagttactac ttttcaagac ttagccagct
1981 tttactcatt ttctaagttt agcttgctct taattattgc tcttctagac ttcactgctc
2041 ctagttactt gcctaagttg cttctgagca gcatctgtct tggaggaata gataacacct
2101 ctgcagtgag ggtcttgagg gcagcggctg cacacgttca gacggctgac tgacttccag
2161 ccacctgtcc ccatacatca gcccatgaat agctccaaac tcatttccac ctgtggctac
2221 atcctgaata aactcttttg caaaacttgt ccttcc
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