LOCUS AK143276 1373 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN
full-length enriched library, clone:E230029B13 product:Immune
costimulatory protein B7-H4, full insert sequence.
ACCESSION AK143276
VERSION AK143276.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1373)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=E230029B13
FEATURES Location/Qualifiers
source 1..1373
/clone="E230029B13"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:E230029B13"
/db_xref="MGI:3550778"
/db_xref="taxon:10090"
/dev_stage="2 days pregnant adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="female"
/strain="C57BL/6J"
/tissue_type="oviduct"
CDS 102..953
/codon_start=1
/note="Immune costimulatory protein B7-H4
(UniProt|Q7TSP5, evidence: FASTY, 100%ID, 100%length,
match=849)"
/note="putative"
/protein_id="BAE25330.1"
/transl_table=1
/translation="MASLGQIIFWSIINIIIILAGAIALIIGFGISGKHFITVTTFTS
AGNIGEDGTLSCTFEPDIKLNGIVIQWLKEGIKGLVHEFKEGKDDLSQQHEMFRGRTA
VFADQVVVGNASLRLKNVQLTDAGTYTCYIRTSKGKGNANLEYKTGAFSMPEINVDYN
ASSESLRCEAPRWFPQPTVAWASQVDQGANFSEVSNTSFELNSENVTMKVVSVLYNVT
INNTYSCMIENDIAKATGDIKVTDSEVKRRSQLQLLNSGPSPCVFSSAFVAGWALLSL
SCCLMLR"
regulatory 1354..1359
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 1373
/note="putative"
BASE COUNT 382 a 346 c 328 g 317 t
ORIGIN
1 ggtgagtcac aacacccagg agggcagcag caggcaggca gctccactca ccaaaatctg
61 gccccacaca cagcaggact gtgggaagga actccctctc catggcttcc ttggggcaga
121 tcatcttttg gagtattatt aacatcatca tcatcctggc tggggccatc gcactcatca
181 ttggctttgg catttcaggc aagcacttca tcacggtcac gaccttcacc tcagctggaa
241 acattggaga ggacgggacc ctgagctgca cttttgaacc tgacatcaaa ctcaacggca
301 tcgtcatcca gtggctgaaa gaaggcatca aaggtttggt ccacgagttc aaagaaggca
361 aagacgacct ctcacagcag catgagatgt tcagaggccg cacagcagtg tttgctgatc
421 aggtggtagt tggcaatgct tccctgagac tgaaaaacgt gcagctcacg gatgctggca
481 cctacacatg ttacatccgc acctcaaaag gcaaagggaa tgcaaacctt gagtataaga
541 ccggagcctt cagtatgcca gagataaatg tggactataa tgccagttca gagagtttac
601 gctgcgaggc tcctcggtgg ttcccccagc ccacagtggc ctgggcatct caagtcgacc
661 aaggagccaa tttctcagaa gtctccaaca ccagctttga gttgaactct gagaatgtga
721 ccatgaaggt cgtatctgtg ctctacaatg tcacaatcaa caacacatac tcctgtatga
781 ttgaaaacga cattgccaaa gccaccgggg acatcaaagt gacagattca gaggtcaaaa
841 ggcgaagtca gctgcagttg ctgaactctg ggccttcccc gtgtgttttt tcttctgcct
901 ttgtggctgg ctgggcactc ctatctctct cctgttgcct gatgctaaga tgaggggccc
961 tggctacaca aaagcatgca acgttgctgg tccaacagaa tcccggagaa ctacagaaat
1021 attttcctca agacatgacc tagttttata tttctagaag aagatgaaat catgtctaga
1081 agtctggaga gagcagacag gaacaagatg tggaaggaaa acaaaagtaa cccacagaca
1141 cccccgatcg gaacaagatg gacctagaaa ataattcaac caaactagag tatactaagt
1201 gtgctgttac aatgtgtgta gggtaggtgt cctcccacat ctcaggggcc tcccctggtc
1261 caccagctcc tgagttagga tgggctgtta tgatgtcact ctgaaggttc ctggatggtt
1321 cctactgcca tatactcatt ttatattcag cacattaaac catagtgaat gct
//