LOCUS AK138043 1604 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
enriched library, clone:A130076O20 product:Mix1 homeobox-like 1
(Xenopus laevis), full insert sequence.
ACCESSION AK138043
VERSION AK138043.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1604)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A130076O20
FEATURES Location/Qualifiers
source 1..1604
/clone="A130076O20"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A130076O20"
/db_xref="MGI:3541711"
/db_xref="taxon:10090"
/dev_stage="16 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="thymus"
CDS <1..34
/codon_start=2
/note="Mix1 homeobox-like 1 (Xenopus laevis)
(MGD|MGI:1351322 GB|NM_013729, evidence: BLASTN, 99%,
match=1603)"
/note="putative"
/note="start codon is not identified"
/protein_id="BAE23542.1"
/transl_table=1
/translation="EHIFSALGNF"
regulatory 1588..1593
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 1604
/note="putative"
BASE COUNT 381 a 385 c 292 g 546 t
ORIGIN
1 ggagcacatc ttttctgcct taggtaactt ctgaggattc tgggagcgtt gaggatgcac
61 tcagggagat ctgggagatt ggagctgatc tcctgactgg ccatggcctc ggttctggat
121 catctctcac attttggttc ccttctctga cactgagcct ttactgctgg cttgttctcg
181 gtagccaccg aaaagtcacc gtgactctcc aagactgcac attataattt ggtccgcatc
241 ccctgggcct tcttactagg gttattccta tttttcagac tgattgttca gaacttgttt
301 tcttcataag aaccttcggc ttgactcagt ttccccactt tctcggcagc tgctgtcttc
361 ttgtagtcct agttgtaagt gggttcacac actctatccc acatcctgta ctctggactc
421 atcaccaaga ctcattactc tttttcactg agtctttttg ttttgttctt gaccttgctg
481 tgtaaggaag gaaagatgcc tcaaactcct gtcctcctag ctttatttgc caccataact
541 ggatgctgct tttttttttt tttttttgct taaaaatgta tatggtatta acatatatct
601 ccaaaataat ggatgtcaat atttttgttt aaaattttat atggtattaa catacatacc
661 caaatcaaac tgcttaacac atgcatgaca tcactcacct ttctttgttc tgtgatgata
721 taatctatta gcaattttca agtatatgaa atgtagatat taactatagc catctccatc
781 gagtttttca gcttctctct cccagctgac tgtgtatcct agccacctcc cctgccctca
841 cttgactggt ttctcatctg gcctgtcagc tagacgctcc ctcagtaaca acgctacttt
901 ccagctcttt caagagcccc catgcctctt gtcccccact tttttgtttt gtttttaatt
961 actccatttg gaagtctgtg gcagcttcca gttaaccaaa ctgtaagacc ctgtcaagca
1021 cgctcacagt caatgccatc atctttagct tatgcaaacc ttaagatcat ttacccaaaa
1081 tgtgcttctc tgtctgtcat tcctttctgg ttgggactca gtgaaaaagt ttctctttca
1141 aaacagctca ggaaacagct tccctttctg aagcctgaac ttttcgtaag taatcttaat
1201 ttttgtacct gttacttgga ccaccatttt tcttagcact tgttattatg tttcctgtgc
1261 aacattagtg ggttactgtt tctcactact cttcatacat aaatcccatt gaagtgagct
1321 ctgttttgaa ttgaaccctg ttgtcccaga cctcagtgct gggaaagttg gggagtacac
1381 aatgaatgag aaaacattcc gaagtaagct tacttgctgg gctgctaaga tggctcagtg
1441 gaggcagaca catgaccacc aggcctgaca acctgagttt gatccccaag acccacatgg
1501 tggatgggag aacgggtttc tttaagttgt ctttttgact tccatatgtg tggtatggtg
1561 tgcacccaca taagtacaca catacaaaat aaatagatta aagg
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