LOCUS AK136444 989 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus adult male colon cDNA, RIKEN full-length enriched library, clone:9030224E03 product:CD7 antigen, full insert sequence. ACCESSION AK136444 VERSION AK136444.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 989) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=9030224E03 FEATURES Location/Qualifiers source 1..989 /clone="9030224E03" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:9030224E03" /db_xref="MGI:3539411" /db_xref="taxon:10090" /dev_stage="adult" /mol_type="mRNA" /organism="Mus musculus" /sex="male" /strain="C57BL/6J" /tissue_type="colon" CDS 68..700 /codon_start=1 /note="CD7 antigen (MGD|MGI:88344 GB|NM_009854, evidence: BLASTN, 100%, match=975)" /note="putative" /protein_id="BAE22981.1" /transl_table=1 /translation="MTQQAVLALLLTLAGILPGPLDAQDVHQSPRLTIASEGDSVNIT CSTRGHLEGILMKKIWPQAYNVIYFEDRQEPTVDRTFSGRINFSGSQKNLTITISSLQ LADTGDYTCEAVRKVSARGLFTTVVVKEKSSQEAYRSQEPLQTSFSFPAAIAVGFFFT GLLLGVVCSMLRKIQIKKLCASGIKESPCVVYEDMSYSNRKTPCIPNQYQ" regulatory 970..975 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 989 /note="putative" BASE COUNT 232 a 292 c 242 g 223 t ORIGIN 1 tcagtgctca gtaatgtgtt gtagccagag tggctgattt ggctcagatc acctggattt 61 gggcgtcatg actcagcagg cagtgctggc tttgctgctt acactggccg gaatcctgcc 121 tggccccctg gatgcccaag acgtacacca gtccccccga ctcacgattg cctctgaggg 181 ggattctgtc aacatcacct gctctacaag agggcacctg gaagggatct taatgaagaa 241 gatctggcct caggcttaca atgtgattta ctttgaagac cggcaggagc ccacagtaga 301 caggaccttc tcaggccgaa ttaatttctc tggttcccag aagaacctga ccatcaccat 361 aagctccctc cagctggcag acactggaga ctacacctgc gaggctgtca ggaaagtcag 421 tgcccgtggc ttgttcacca cggttgtggt gaaagaaaaa tcatcccaag aagcatacag 481 atcccaggaa cctctgcaga catcattttc cttcccagct gccattgctg taggcttctt 541 cttcaccggg ctgctccttg gggtggtgtg cagcatgctg aggaagatac agatcaagaa 601 actgtgtgcc tcagggatta aggaatctcc gtgcgtagtg tatgaagaca tgtcctacag 661 caaccgcaag acgccatgca tccccaacca gtaccagtga acccctctgc ctgcagtccc 721 ccgtgccttg tttcagcaga gcttacagca gtcctgctgg cccccacacc ccgcccaact 781 ccccagcact cttcctgtgg tactcaaatt cccccttggt gcttctgggt gggtgggatt 841 cctcctctgt aagctccccc acagggctct gcaatctgtc accaacccta gccaggtacc 901 ctgacatcag aaacaaagct tgggggtggg gaggtacctg ccttggagcc gcctggccag 961 gaaaaattaa ataaacacac aaatacatt //