LOCUS AK119237 1827 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-116-D12, full insert
sequence.
ACCESSION AK119237
VERSION AK119237.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1827)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1827
/clone="001-116-D12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 215..1543
/db_xref="Osa1:LOC_Os04g42250"
/note="(Rice Genome Annotation Project) anthranilate
N-benzoyltransferase protein 2, putative, expressed"
/note="mapping to R04-TIGRv4S1-000696F (Chr.4: short
arm=24774814, long arm=24780288, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG99596.1"
/translation="MAITVRRSTMVRPAWETPRVRLWNSNLDLVVPRFHTPSVYFYRR
GPEGGGAPEGFFDGERMRRALAEALVPFYPMAGRLARDEDGRVEIDCNGEGVLFVEAD
APDASVDDYGDFAPTMELKRLIPAVDYTDDISSFSLLVLQVTYFKCGGVSLGVGMQHH
VADGMSGLHFINSWSDLCRGTQIAIMPFIDRTLLRARDPPTPSYPHVEYQPAPAMLSS
VPQSVTANKTTPPPTAVDIFKLTRSDLGRLRSQLPSGEGAPRFSTYAVLAAHVWRCVS
LARGLPSEQPTKLYCATDGRQRLQPPLPEGYFGNVIFTATPLAEAGKVTSGLADGAAV
IQEALDRMNDSYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGW
GRPVFMGPGGIAYEGLAFVLPSANKDGSLSIAISLQAEHMEKFRKLIFEV"
BASE COUNT 359 a 542 c 507 g 419 t
ORIGIN
1 acgcctacgc gagctcggag ctcagctcta ccgcccccgc acgccgccgc cgcccgtcgc
61 ctataaaagc cgctccaccc ccaacgagcc caccagctgc tctccaccaa gagctgctcc
121 gcccccctac cccgcaaccc gttgctttgt gccgcgcctc gctttggtct tcatccgcct
181 cagatctgat tcgttctagg ttggtctggg gaagatggcg atcacggtga ggcggtcgac
241 gatggtgcgg ccggcgtggg agacgccgcg ggtgcggctg tggaactcga acctcgacct
301 cgtggtgccg cggttccaca ccccaagcgt ctacttctac cgccggggcc ccgagggagg
361 gggcgcgccg gaggggttct tcgacgggga gcggatgcgg cgcgcgctgg cggaggcgct
421 cgtgccgttc tacccgatgg ccgggcggct cgcgcgcgac gaggacggga gggtcgagat
481 cgactgcaac ggggaagggg tgctcttcgt cgaggccgac gcgcccgacg cctccgtcga
541 tgactacggc gacttcgcgc ccaccatgga gctcaagcgc ctcatccctg ccgttgatta
601 caccgacgac atctcctcct tctcgctcct cgtgctccag gtgacctact tcaagtgcgg
661 aggtgtctcc cttggagttg gtatgcaaca ccatgtggcg gatggcatgt ccggtttgca
721 ctttattaac tcatggtctg acctctgccg aggaactcaa attgccatca tgcccttcat
781 tgaccgcact ctcctacgag cccgagatcc accaactcca tcatacccac atgttgagta
841 ccagcctgcc ccagccatgc tgtcctccgt accccagtct gttactgcta ataagacaac
901 accacctcca actgctgtgg acattttcaa gcttacccgc tcagaccttg gtcgactgcg
961 ttcgcagctc ccatcaggag aaggtgcacc acgtttcagc acatatgcag ttcttgctgc
1021 acatgtctgg cgatgcgtat ctcttgcacg tggcctgcct tctgaacagc ccactaagct
1081 gtattgtgcc actgatgggc gacaacggtt gcagcctcca cttccagaag gttactttgg
1141 gaatgtcatt ttcaccgcca ctccacttgc tgaggcaggc aaggtgacca gtgggctggc
1201 agatggagca gcagtcatcc aagaggcgct agataggatg aacgatagct actgccgctc
1261 agcattggac tacctggagc tgcagcctga tttatcagca ttggtccgtg gagcacacac
1321 tttccggtgt ccgaacctcg ggctcaccag ctgggtgcgc ttgccaattc atgatgcaga
1381 ttttggatgg ggaagaccag tgttcatggg tcctggtggc atcgcctatg aagggctggc
1441 gtttgtcctc ccaagcgcga acaaggatgg tagcctatcc atagccatct cattgcaggc
1501 tgagcacatg gagaagttca ggaagctgat cttcgaggtg taagcagact acttatgtta
1561 tgtcagggag aagttgtaga gctagagttc tcaggtaaaa taccttcaag tgagtcatgg
1621 gggctatgct cttgctcctg ttgagcaaat tgtctggcca cgttctcttg taccttagct
1681 tgcaaggata tttggccatc accacagccg tgtgacgatg tgagcaacca ataatgagct
1741 gtttttttgt tttcgtttag gataggaatc aacaatgaag aaaaggtgct gtattctgtg
1801 aaactacatg gcagtgttgt tcttacc
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