LOCUS AK119193 2132 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-041-C01, full insert
sequence.
ACCESSION AK119193
VERSION AK119193.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2132)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2132
/clone="001-041-C01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2132
/db_xref="Osa1:LOC_Os06g09450"
/note="(Rice Genome Annotation Project) sucrose synthase
1, putative, expressed"
/note="mapping to R06-TIGRv4S1-000265R (Chr.6: short
arm=4795713, long arm=4799198, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 543 a 489 c 530 g 570 t
ORIGIN
1 cacctgtcgt ccaagttgtt ccaggacaag gagagcctct accccttgct gaacttcctg
61 aaagcccata accacaaggg cacgacaatg atgctgaatg acagaattca gagccttcgt
121 gggctccaat catcccttag aaaggcagaa gaatatctga tgggcattcc tcaagacacg
181 ccctactcgg agttcaacca caggttccaa gagctcggtt tggagaaggg ttggggtgac
241 tgtgcaaagc gtgtgcttga caccatccac ttgcttcttg accttcttga ggcccctgat
301 ccggccaact tggagaagtt ccttggaact attccaatga tgttcaatgt tgttatcccg
361 tctccgcatg gatactttgc ccaatccaat gtgttgggat accctgatac tggtggtcag
421 gttgtgtaca ttttggacca agtccgcgct ttggagaatg agatgctttt gaggatcaag
481 cagcaaggcc ttgatatcac acctaagatc ctcattgtaa ccaggctgtt gcctgatgct
541 gttggtacta catgcggcca gcgtgtggag aaggttattg gaactgagca cactgacatt
601 cttcgtgttc cattcaggag tgagaatggt atcctccgca agtggatctc ccgttttgat
661 gtctggccat tcctggaaac atacactgag gatgttgcaa acgaaattat gagggaaatg
721 caagccaaac ctgatctcat cattggcaat tacagtgatg gaaaccttgt tgccactctg
781 ctggctcaca aattaggagt tacccagtgt accattgctc atgccttgga gaaaaccaaa
841 taccccaact cagacatata cttggacaag tttgacagcc agtaccactt ctcatgccaa
901 ttcactgctg atcttatcgc catgaatcac actgatttca tcatcaccag tacattccaa
961 gaaattgctg gaagcaagga cactgtgggg cagtatgaat cacacattgc attcaccctt
1021 cctgggcttt accgagttgt gcatggcata gatgtttttg atcccaagtt caacattgtc
1081 tctcctggag ctgacatgag tgtctacttc ccgtacaccg aggctgacaa gaggctcact
1141 gctttccacc ctgaaattga ggagcttctc tacagtgaag tcgagaacga tgaacacaag
1201 tttgtattga aggacaagaa caagccaatc atcttctcca tggctcgtct tgaccgagtg
1261 aagaacatga caggtctggt tgagatgtat ggtaagaatg cacatctcag ggatttggca
1321 aaccttgtga ttgtttgtgg tgaccacggc aatcagtcca aggacaggga ggagcaggct
1381 gagttcaaga agatgtacgg tctcattgac cagtacaagt tgaaggggca tatccgctgg
1441 atctcagctc agatgaaccg tgttcgtaac ggggagttgt accgatacat ttgtgacacc
1501 aagggagtct ttgtccagcc tgcattctat gaagcgtttg gtctgactgt catcgaagcc
1561 atgacatgtg gtttgccaac aatcgcaaca tgccatggtg gccctgctga gattattgtt
1621 gatggggtgt ctggtctgca cattgatcct taccacagtg acaaggctgc tgatatcttg
1681 gtcaacttct ttgagaagtg caagcaggat tcaacctact gggacaatat ttcacaggga
1741 ggtctgcaga ggatttacga gaagtacacc tggaagctgt actctgagag gctgatgacc
1801 ttgactggtg tatacggatt ctggaagtac gtaagcaacc ttgagaggcg cgagactcgc
1861 cgttacattg agatgttcta tgctctgaaa taccgcagcc tggccagcgc cgtcccattg
1921 gctgtcgatg gagagagcac atccaagtaa tggaggggaa aatatgcatc ttcagcagga
1981 gaagccgtca gctgcattcg aatttgataa ttttctgtag ttgtcatttg gcatccatgt
2041 ttgccatgga tgtgtactat gtctaaggtt tcagtacttt tgcgagattt tgggcagtgc
2101 ttgcctcaaa taaacgccgg ttcctggtgt tt
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