LOCUS AK106534 1627 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-108-B04, full insert
sequence.
ACCESSION AK106534
VERSION AK106534.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1627)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1627
/clone="002-108-B04"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1627
/db_xref="Osa1:LOC_Os02g34850"
/note="(Rice Genome Annotation Project) histone-lysine
N-methyltransferase, H3 lysine-4 and H3 lysine-36specific
ASHH2, expressed"
/note="mapping to R02-TIGRv4S1-000829F (Chr.2: short
arm=20899904, long arm=20904608, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 474 a 319 c 390 g 444 t
ORIGIN
1 tgaatccatc atcagctcct attgacagtg agcacatttt gggagttgaa ggaagattga
61 acagcttgct tgatgtaaat ggaggtatta gcaaacgaaa agacgcaaca aatggatact
121 tgaagcttct ccttgtgact gcagcggaag gtgacaatgc tgggggcacg tctaaaagtg
181 taagggatct ttcgttaatt cttgatgcac ttctgaaaac aagatccaat tctgtcctgt
241 tggatatcat caataagaat ggactgcaaa tgcttcacaa tatattaaag cagaataaaa
301 gcgatttcca taggatacct ataataagaa agcttgtgaa ggtacttgag tttctagctt
361 ccaagggcat tctgacatct gaacatataa atggtggtcc tcgatgtgct gggacagaaa
421 gcttcaggga gtcgatgttg ggcttgttaa ggcataatga tatgcaggtt caacagattg
481 ctcggaactt tcgtgataga tggatccaat gggcccctcg aaatatttca agaaatgagc
541 caacagaata ttcacgtgca tccatatctg cacacgatat tcatgtcatt tcaacagctg
601 gtggatcttt tccaacttca gccaacacta tggattggaa atccatcaga agaaaacgca
661 agagccgttg ggattaccaa ccagatgacc actataaaat gggtggcctg aaaattcaga
721 aagtttgtcc tgtacaaagt gagtttcgga ctggctcggt gggaaataag ttgcatggta
781 attggggaac gaacagctcc cacaatgatg ttcctgtggt gggaagttca gccgatggtg
841 cagatgatga agcacctcct ggatttgagt ctcagcagga aagtcggcct ggacaagctt
901 gtttagaatc gggggtttct ccaggattat acttggagag gtatcaacat aacttgacta
961 tttcatacgg gattccaatc gcttttgttg agcattttgg aaccccagaa gttgaaggag
1021 ggccatgtcg caaaaactgg aaagtcgcac ctggtgtgcc tttccagccc tttccaccat
1081 tgccgcccta tccaagaggg agtccttgtc cttccactca gatgtctcag catgaacaca
1141 acagtttggg acattgtggc agggctgcaa atagagacgg gagaatacat aggaattgga
1201 gaaatggggc gagaacaaaa tttccataca atcatcaagg acggagattt cctaacaata
1261 atcaaagatt ttgaaagttg cctgctgcct ccaacgtctc aggagcaggg tgatccagga
1321 cctagaggca gggagtgacc caagtcctgg tttttgaacc tcaaatagtg gtttatacat
1381 tgtagttcct gtttatcaga gccccagagg tgtatcagaa ttgcgtgcgc ccgtaattct
1441 atttaatagg agcagatgtt actgtcagtt tattagaggt agaaacatat tctgcaaata
1501 ggtcattgcc tttgcggttc ttttactaat taatttgccc attggctccc tctgcgctat
1561 gtgtaatccc ataggaataa ttgatttgat tcaaatcgtt ttacaggcaa aacggctaat
1621 tggtttc
//