LOCUS AK105906 1482 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-204-G02, full insert
sequence.
ACCESSION AK105906
VERSION AK105906.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1482)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1482
/clone="001-204-G02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 35..1363
/db_xref="Osa1:LOC_Os05g50600"
/note="(Rice Genome Annotation Project) serine
carboxypeptidase CPVL precursor, putative, expressed"
/note="mapping to R05-TIGRv4S1-001140F (Chr.5: short
arm=28920888, long arm=28922368, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG97429.1"
/translation="MAPPLLLVSLLLIGFVSARAITPSAEAAAVFPKEALPTNSGYLP
ITTTNASLFFAYYEATHPLTPPASTPLLLWLQGGPGCSGLAGNFFELGPYFVNRDALS
LSPNPFSWNRRFGLLFIDNPLGTGFSAAPSPAAIPTNQSVVAAHLFAALQSFFALQPG
SRSRPFFLTGESYAGKYIPAAGSYILAVNPTLPTRLRVNLHGVAIGNGLTHPVAQVAT
HADTAYFMGLINAKQKRELEALQARAVELTNAARWSEAADARGLVLSWLENATGLATL
FDAAKKRPYETGPVGKFVNRAEVKAALGARGDVEWEECSDAVGAAMHGDVMKSVKPEV
EALLRGTRVLLYQGIRDLRDGVVSTEAWMRELEWDGLPAFLDADRAVWRIGEELAGYV
QRSGPLSHVVVYGAGHLMPADNGRAAQEMIEDWVLQAGLFGRHGGMKRAA"
BASE COUNT 223 a 527 c 494 g 238 t
ORIGIN
1 atcctgttcc catctcaact gcggtcactc accaatggct ccgccgcttc tcctcgtctc
61 gctcctgctc atcggcttcg tcagcgccag agccatcaca ccctcagctg aagcggcggc
121 ggtgttcccg aaggaagccc tgccgaccaa ctccggctac ctccccatca cgacaaccaa
181 cgcctcgctc ttcttcgcct actacgaggc cacgcacccg ctcacgccgc cggcctccac
241 gccgctcctc ctctggctcc agggcggccc cggctgctcc ggcctcgccg gcaatttctt
301 cgagctcggc ccctacttcg tcaaccgcga cgcgctctcc ctctcgccca accccttctc
361 gtggaatcgc cggtttggtc tcctcttcat cgacaacccg ctcggcacgg gcttcagcgc
421 cgcgccgtcc cccgccgcca tccccaccaa ccagtccgtc gtcgccgcgc acctcttcgc
481 cgcgctgcag tcgttcttcg cgctccagcc gggctcccgc tcccgcccct tcttcctcac
541 cggcgagagc tacgccggca agtatatccc ggcggctggg tcgtacatcc tggccgtgaa
601 ccccacgctg ccgacgcggc tgcgggttaa cctccacggc gtggccatcg gcaacgggct
661 gacgcacccc gtcgcgcagg tggcgacgca cgcggacacc gcctacttca tgggcctgat
721 caacgccaag cagaagcggg agctggaggc gctgcaggcg agggcggtgg agctgacgaa
781 cgcggcgagg tggagcgagg cggccgacgc gagggggctc gtgctgtcgt ggctggagaa
841 cgcgacgggc ctggcgacgc tgttcgacgc ggcgaagaag cgcccctacg agacgggccc
901 cgtggggaag ttcgtgaacc gggcggaggt gaaggcggcg ctgggcgcgc gcggcgacgt
961 ggagtgggag gagtgcagcg acgcggtggg cgcggcgatg cacggggacg tgatgaagag
1021 cgtgaagccg gaggtggagg cgctgctgcg gggaacgcgc gtgctgctgt accagggcat
1081 ccgcgacctc agggacggcg tggtatcgac ggaggcgtgg atgcgggagc tggagtggga
1141 cggcctgccc gccttcctcg acgccgaccg cgccgtgtgg cgcatcggcg aggagctcgc
1201 cgggtacgtg cagcgctccg gcccgctctc ccacgtcgtc gtctacggcg ccgggcacct
1261 catgccggcg gacaacggcc gcgcggcgca ggagatgatc gaggattggg tgttgcaggc
1321 ggggctattc gggcgccacg gcgggatgaa gcgcgcggcc tgactccgca ctccgggcgc
1381 cggcggaggc caacctgtgg cctcatctct tgcggtgtca aactctaatc tgattttaga
1441 atcgagcaga gtacatcgag gaatacaagc atttgagtct at
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