LOCUS AK105274 2674 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-115-H08, full insert
sequence.
ACCESSION AK105274
VERSION AK105274.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2674)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2674
/clone="001-115-H08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 537..2429
/db_xref="Osa1:LOC_Os08g12430"
/db_xref="RAP-DB:Os08g0220600"
/note="(RAP Annotation release2) Fibronectin, type III
domain containing protein"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R08-TIGRv4S1-000256R (Chr.8: short
arm=7332723, long arm=7341735, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG97174.1"
/translation="MDPGKHNGMSLKDRRELVYEVSQWPQGASEILQCWTRRDLLELI
CAELGKERKYTNVPKSKMIAYLLKLVLRKNGQPKDDNANASILGQNNKDDTEKKENEE
QPHHFSRSAKSDSSMCREAQAGSTAVCRNVACQATLNSGDAYCKRCSCCICHKYDENK
DPSLWLVCSSDTPYSGYSCGTSCHLKCALKNKKAGIFKNGCNKKSDGSFYCVWCGKMN
WLMRNLRKQLAIARESRRVDVLCERLSLTHKMVKGSERYRELANIINSAVKILEKEVG
CALDQVSAITGRGIVNRLCCGADVQKLCSCALEMVDSTLSSTLDFETNNNLEAPGPQP
QVFFVEITPFSVLVVLKYQDNIAEEIDGCKVWHRSANMANYPAEPTCHVLRPNTRSLF
SGLSPSTEYFFKVLPFGCSQGYGEWEVKCSTRSLNHGSSQCSTQNSESMSIKEDLEQH
QKNELNLKNKQWWGIQYDSPSANSNENDVCPDLHPKRAKLAKLDGASDNDESQLLPTS
EVLPFMSSNSSLSEVPSKPDWVSSTPDSACKNHVERQYEYSVKVIRWLEHEGHMDKDF
RVKFLTWFSLKASAQERRIVNAFVDALVSDPASLVAQLIDSFMEVVCSKEKPAQPNGG
CCNLWH"
BASE COUNT 724 a 540 c 674 g 736 t
ORIGIN
1 acgatcttgg ttcgcttcgt gcgactcctc ctcctcttgc gccggtgccg acctcgcctc
61 gcctcgcctg cgtcgcgtcg atctcgccag cggcggcgcc agccggccgg cgtctgctgc
121 gtcctccgca tcctcgctcg ccgagagttg gggtcaagca aagttggttg ttttttactc
181 gaatgtcgtg aggaacaccg aggaatcctc cagtttcgca tgagacccat atgttgaaca
241 aaggtgaagc tgtgctgtgg agacctgata aaattttcta ataatgcttg tgcaaatgaa
301 gaatactgtt catctcacgc tattcctgtg ttctttctca agaatgcttt gctcctattc
361 ttttattgaa atcaatttgt gttattatct tcccattcgt aaggtgctga ctagttcact
421 tttttatgtc atagagtagg aaggttctct gtactgcaag tgtttggatt tcctcgagcc
481 gaatgagctt tcactggtgg atgtggtaat aaaagtccct gttttcagga tttttcatgg
541 acccgggaaa acacaatgga atgagtctga aggacagaag agaattagta tatgaagttt
601 cacaatggcc acaaggtgcc tctgagattt tacaatgttg gactcgcaga gatcttcttg
661 agcttatctg tgctgagttg ggcaaggaga ggaaatacac taatgttcca aaatctaaaa
721 tgattgctta tctgttaaaa ttagttttac gaaagaatgg acagccaaag gatgataatg
781 caaatgcttc aattttgggg cagaataaca aagatgacac agagaagaaa gaaaatgagg
841 aacagccaca tcatttcagc agaagtgcaa agtctgactc atcaatgtgc agagaggccc
901 aagctggtag cacagcggta tgccgaaatg ttgcatgcca ggctactttg aactctggag
961 atgcgtattg caagcgttgc tcttgctgca tttgccataa atatgatgag aacaaagatc
1021 ctagcttatg gttggtttgc agctctgata caccgtactc tggctattca tgcggcacat
1081 catgccacct aaagtgtgct ctaaagaata aaaaagctgg cattttcaag aatgggtgca
1141 acaagaagtc agatggtagt ttttactgtg tttggtgtgg gaagatgaac tggctaatga
1201 ggaatctgcg taagcagctg gcaattgcaa gagaatctag aagagttgat gtactgtgtg
1261 agcgtttgtc actgactcat aaaatggtga aagggtctga acgttacagg gaactggcaa
1321 acataatcaa ctcagctgtg aaaatacttg agaaagaagt tggttgtgca ttagatcaag
1381 tgtctgcaat cacggggcgg ggcatcgtga accggctttg ttgtggtgct gatgttcaaa
1441 aactttgttc atgtgcacta gaaatggtag actccacatt gagtagcacc ctggacttcg
1501 aaacaaacaa taatctggaa gcgccaggtc cccagcctca agtatttttt gtggagatta
1561 ctccattttc tgtgcttgtt gtattgaagt accaggataa tatcgctgag gagattgatg
1621 gttgcaaagt ttggcaccga agtgcaaaca tggccaacta tccagcagag cccacttgcc
1681 acgttcttag accaaataca aggagtcttt tttcaggtct aagcccttct actgagtatt
1741 tcttcaaggt tttgcctttt ggctgttcac agggatatgg cgaatgggag gtaaaatgct
1801 ctacacgaag ccttaaccat ggcagcagcc agtgctcaac acagaattcc gagagtatgt
1861 ccatcaagga ggatttggag cagcatcaga aaaatgagtt gaatctgaag aacaagcagt
1921 ggtggggcat tcaatatgac tcaccctcgg caaactcgaa tgagaacgat gtgtgtcctg
1981 acctgcaccc taagcgagct aagctcgcaa agttggacgg tgcaagtgac aacgacgaaa
2041 gccagttgct gccaacatca gaagttttac cattcatgag ctctaattct tcactttcag
2101 aagttccaag caaacctgac tgggttagca gcaccccaga ttccgcctgc aagaaccatg
2161 ttgagaggca gtatgaatac agtgtgaagg tcattagatg gctggagcat gaagggcaca
2221 tggacaagga tttccgcgtg aagttcctca catggtttag cctgaaggcg tcggcacagg
2281 agcgacgcat tgtgaacgcc ttcgtagatg ctctggtgag tgatcctgcg agcctggtag
2341 cacaactgat tgattcgttt atggaggttg tctgcagcaa ggagaagcct gctcagccga
2401 atggtgggtg ctgcaacctt tggcattaga aagttccatt gccactgagg aatctcacta
2461 tcatattttt gccaataatc atctgcatcg aaaagctgag caattcaagc tatggcttat
2521 tgctttattt gatcaattta acactagttg ctgattgcta ggtttctgaa ctgtggtggt
2581 ggtggtggtg gttatgttag gtgtatgaac taagctgaag ttgttgacaa gtgattcctg
2641 gaatgctata aatggaggta ggtttagatg cttc
//