LOCUS AK103981 1494 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:001-017-C03, full insert sequence. ACCESSION AK103981 VERSION AK103981.1 KEYWORDS oligo capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1494) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1494 /clone="001-017-C03" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 119..967 /db_xref="Osa1:LOC_Os01g63770" /note="(Rice Genome Annotation Project) auxin transporter-like protein 1, putative, expressed" /note="mapping to R01-TIGRv4S1-001702F (Chr.1: short arm=37327104, long arm=37331492, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAG96355.1" /translation="MTTYTAWYLAIAALLNGQAEGITHTGPTKLVLYFTGATNILYTF GGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPSASAMYWAFGDELLTHSNAFSL LPKTGWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALARLPIVVP IWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHILTYRTASARMNAAEKPPFFLPS WTGMFVLNMFIVVWVLVVGFGLGGWASMVNFIRQIDTFGLFAKCYQCPKPAPALAQSP VPLPHH" BASE COUNT 255 a 493 c 403 g 343 t ORIGIN 1 catcaacgac cggctggaca agcggacgtg gacgtacatc ttcggcgcgt gctgcgccac 61 cacggtgttc atcccgtcgt tccacaacta ccggatctgg tccttcctgg gcctcggcat 121 gaccacctat accgcttggt acctcgccat cgccgccctc ctcaacggcc aggccgaagg 181 catcacccac accggtccaa ccaagctggt gctgtacttc accggcgcca ccaacatcct 241 ctacaccttc ggcggccacg ccgtcacagt ggagatcatg cacgcgatgt ggaaaccggc 301 caagttcaag tacatctacc tgctggcgac gctgtacgtg ttcacgctga cgctgccgtc 361 ggcgtcggcc atgtactggg cgttcgggga cgagctgctg acccactcca acgccttctc 421 gctgctgccc aagaccgggt ggcgcgacgc ggcggtgata ctgatgctga tccaccagtt 481 catcacgttc gggttcgcgt gcacgccgct ctacttcgtg tgggagaagg tgatcggcat 541 gcacgacacc aagagcatct gcctcagggc gctcgcgcgg ctccccatcg tcgtccccat 601 ctggttcctc gccatcatct tccccttctt cggccccatc aactccgccg tcggcgcgct 661 cctcgtcagc ttcaccgtct acatcatccc ggcactcgcc cacatcctca cctaccgtac 721 ggcctccgcg cgcatgaacg cggcggagaa gccaccgttc ttcctgccga gctggacggg 781 gatgttcgtg ctcaacatgt tcatcgtggt gtgggtgctc gtggtgggct tcgggctcgg 841 cggctgggcc agcatggtca acttcatcag gcagatcgac acgttcgggc tcttcgccaa 901 gtgctaccag tgtcccaagc ccgccccggc gttggcgcag tcgccggtgc cattgccgca 961 ccactagcgc gcgcccgttc cgcaccaccg ccgccgccgc ggcggaccgt gacaacgtgc 1021 accgccgagc ccggagcaag gaacctcgct ctcctggccg gcacggctgc aaaaattcag 1081 tgttgcttag gttttggtcg ccttgtaata tacaaagcct ctcctcctgt gctagggtgt 1141 cacaccaaaa tggtagaaga agaagagggc atgggtccct acgatcttgc cccgggccgt 1201 ccgctgccgc gttgctttcc cccgatcctc gatggtgtcc ttgtgtttgt ttggcttgcc 1261 cctccctctg gcgatatata tgtgatggtc gtcatggctt ataaagattt tcagctcatg 1321 tcacattttc atatgatatg atgtagcata tcactatagg gttatttgtt ttctacctgg 1381 atggagcttg gtccatgttg tctagcgcga gcaattgtaa tcggcgattc ctcgtgctag 1441 ctaaaggcaa aacacggagg cctttgttta ttgcgttccg ctttggatgt tctt //