LOCUS AK103843 3462 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033148J12, full insert
sequence.
ACCESSION AK103843
VERSION AK103843.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3462)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3462
/clone="J033148J12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 773..3379
/db_xref="Osa1:LOC_Os12g18729"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R12-TIGRv4S1-000385F (Chr.12: short
arm=10819905, long arm=10830943, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG96284.1"
/translation="MSGAGQSRGHRLGLHIDSDWPEVLLINDYAVFMGYLSMVVTGTG
FLVLTWSTVILLGGFVSMLSNKDFWSLTVITLVQTRIFDVFLNGKVSHIGYSLKRLCK
AARFIALPHNHKKVGFRGAVRVLVFTIVLCPLFLLYMFGLFVSPWISLWRLIQQDYGV
TAGDSSSKAHLQPALVVLYSLALFQGVLFYYRAISAWEEQKLVKDVADKYMFDTVSRS
SVSDYLHEIKVGCENDPSFARGRNLITYAVKLMESTSPDGYLSGARILDTLIKFNRDD
ASGSELPGQSMQIYNMIGSASSSPILHNLVQMLDFKSAYDGEIRLRAARIVEHFAGEV
RLDKILQGIRCVSSLLELEQKGFQNDHHSSFQEDDGDQLSFEEEDDHQISVKEKDYYP
KDYKQMQLTGMQILLKLSYDKNNLFLMSNTDDPALINKIVALITSKGSLHKKQHNEWS
CMAELGVKILSRFMRFMYGPTKSNNILWHEISTSSKAIGTLESILECDQCDSVLKKHA
IRILKRIFMDTSSAMGEGDRERFIGSLMDMSLHNSNGDFQNLAGVDLALKKQGLSILK
EIYLNPSSIMGEGDRERFIGSLMDMFLDNSKGDFGNLPGEDLDLKKQELSILKEICMD
PSSFMGEGDREKFIGTLMDMFLHNSKGDLFEKLAGDDLVQICRRSGSSATIILRKYGH
DIVDCIADTRSSVYSSMHRKIAAKILNHLCSPYSTDEEHLQNLKEAIIDLIPKVLREA
LGWGLTGEEILRVAVSGLEGTQDDDWKLQEALASLCATVFNRIVSKDADLTARFNNIA
AGICDQTTKPRMTFADLINEAVKVHRIEFKKPEKPKPAARPELYEFVTAKYTPPHFMF
LGEEDPNACCIS"
BASE COUNT 873 a 850 c 898 g 841 t
ORIGIN
1 gactgctttc cctcctcctc atcctcatct tcatctctag acctcatctt ctccagccac
61 caccgcctcc cttcccaccg gtggtggcag cgggaagaca gcggctcggt tgagcccggc
121 ggggagggca cgatttggta tgggaggagc agcggcgact ccatccggcg gtggatccgc
181 cgcctcctag tcccagctct ctctcccccg atcctcctcc tccccttcct ccaccgccac
241 cacccacccc tctccctctc tcagatctgg tgcgcgggga gcggtggagg ctacggcggc
301 ggcggcggcg agatcggtag cagtgatggt ggagaggacg gatccgatgg cggtggttct
361 cgtcaaccag ttcaaggacg acgacagcag cggctgctgc aacgatggat aggctctggg
421 cggctcctcc actctcctcc cctctctcat atccagtggc tcggggtggt ggggcgtggc
481 cgacgcatcc ggcggcggag ctcggcagaa agaggatggt tctagctctc cgatggttta
541 atattgaaac gtacagccca cccaccacca ccccagtcgt ccccagctaa gcgctccctt
601 gcttgcctca gtagacgagc tgccaactag tagcactcca gcaagcagcg ggtcagcgga
661 gtccggaggg cgcacgtgcg ccgcagcgag gtatcagcat ggccaggcgg cggctggctg
721 gccggccggg ttcggcaagc ggctaagcag gtgtttagcg gaggaaggat cgatgtccgg
781 cgccggacag agccgtggtc atcgccttgg attacacatt gattcggatt ggccagaggt
841 cttgttgatc aatgactatg cggtgttcat ggggtacctg tcgatggttg tcaccgggac
901 ggggttcctg gtgctcacgt ggtccaccgt catcctcctc ggtggattcg tctccatgct
961 atccaacaag gacttctgga gtctcacggt gatcacgctc gttcaaacaa ggatattcga
1021 tgtttttctg aatggaaaag taagccacat tgggtactca ttgaagcgct tgtgcaaggc
1081 cgcacgcttc atcgcgttgc cccataacca taagaaggtt gggttcaggg gtgctgttcg
1141 agtgcttgtc ttcaccatcg tcttgtgtcc gctgttcctg ctctacatgt ttgggctctt
1201 cgtttccccc tggatttcgc tgtggcgtct aatccagcag gattacggcg tgacggccgg
1261 agacagcagc agcaaggcac acctgcagcc tgcgctggtg gttctctact ccctggccct
1321 gttccagggc gtcctcttct actacagggc catctctgct tgggaagaac agaagctagt
1381 gaaagatgtg gccgacaaat acatgtttga tacagtgtcg cgcagttcag tttcggacta
1441 tttacatgag atcaaggtcg gatgtgagaa tgacccgtcc tttgccagag ggaggaacct
1501 gatcacatac gctgtcaagc tgatggaatc cacatcaccg gatgggtacc tttcaggtgc
1561 acggattctt gatacactca tcaagtttaa tagagatgat gcatcgggga gcgaattacc
1621 ggggcagagt atgcagatat acaatatgat tggatctgca tcctccagtc ccatactcca
1681 caacttagtt cagatgctgg atttcaaaag tgcatatgat ggagagatca ggttgcgagc
1741 cgcaaggatt gttgagcact ttgctggtga ggtccgttta gacaaaatcc tgcaggggat
1801 tcgatgtgta tcttccttgc ttgaactcga gcagaaagga tttcagaatg accaccatag
1861 ttctttccaa gaagacgacg gcgaccaact ttcttttgaa gaagaggatg atcaccagat
1921 ttctgtcaaa gaaaaggatt attaccccaa agattataaa cagatgcaac ttacaggcat
1981 gcagatcctt ttaaagctct cctacgacaa gaacaacttg ttcctcatga gcaacacaga
2041 tgatccggcc ttgatcaaca agattgtggc acttataacg tccaagggat cacttcacaa
2101 aaaacaacat aacgaatggt cctgtatggc agagctcggg gtgaagatac taagccgatt
2161 tatgcgattt atgtatggcc ctacaaaatc aaacaatatt ctgtggcatg aaatatcaac
2221 aagcagcaaa gcaatcggca ccttggagag tattcttgag tgtgaccaat gtgactctgt
2281 gctgaagaaa cacgccataa ggattctcaa aaggatattc atggatacat cttcggctat
2341 gggtgaagga gacagagaaa ggttcattgg ctccttgatg gacatgtctc ttcacaacag
2401 taatggtgac tttcaaaatc tggcaggtgt agatctggcg ctcaagaaac aagggttaag
2461 cattctcaaa gaaatatact tgaatccatc ttcgattatg ggcgaaggag acagagaaag
2521 gttcatcggc tccctgatgg acatgtttct tgacaacagt aagggcgact ttggaaatct
2581 gccaggtgaa gatctggacc tcaagaaaca agagttaagt attctcaaag aaatatgcat
2641 ggatccatct tcgtttatgg gcgaaggtga cagagaaaaa ttcatcggca ccctgatgga
2701 catgtttctt cacaacagca agggcgactt gtttgaaaaa ctagcaggtg atgatctggt
2761 gcagatatgt agaagaagtg gaagcagtgc cacgatcata ttgaggaaat atggtcatga
2821 tattgttgat tgtattgctg atactcgttc aagcgtatat agcagcatgc acagaaaaat
2881 tgcagcaaag atcctcaatc atctgtgtag tccctactcc actgacgagg aacatcttca
2941 gaatctgaag gaggccatca ttgatttgat acccaaggtg ctaagagaag cacttggttg
3001 ggggttgaca ggagaagaga tactgcgagt ggcagtttca ggccttgaag gtacccaaga
3061 tgatgactgg aaattgcagg aagcattggc gtccctctgt gcaaccgtgt ttaacagaat
3121 tgtcagcaag gatgcagatt tgactgctcg gttcaacaac atcgccgctg gtatctgcga
3181 ccagacaacg aagcctcgca tgaccttcgc agacctcatc aatgaagctg taaaagttca
3241 tcgcatcgaa tttaaaaaac cagaaaaacc aaaaccagct gccaggccgg aactgtacga
3301 gtttgtgact gcgaaataca ccccgcccca ctttatgttt ttgggcgagg aagatcccaa
3361 cgcgtgttgt atctcttgat aacaccctaa tttgtacttt ctccgtttca caatgtaagt
3421 cattctatta tttcctatat ttatatggat attaatgaat ct
//