LOCUS AK100334 2910 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023080P07, full insert
sequence.
ACCESSION AK100334
VERSION AK100334.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2910)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2910
/clone="J023080P07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 36..2486
/db_xref="Osa1:LOC_Os03g28330"
/db_xref="RAP-DB:Os03g0401300"
/note="(RAP Annotation release2) Sucrose synthase 2 (EC
2.4.1.13) (Sucrose-UDP glucosyltransferase 2)"
/note="(Rice Genome Annotation Project) sucrose synthase
2, putative, expressed"
/note="mapping to R03-TIGRv4S1-000869R (Chr.3: short
arm=16280040, long arm=16284851, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG94557.1"
/translation="MGEAAGDRVLSRLHSVRERIGDSLSAHPNELVAVFTRLVNLGKG
MLQAHQIIAEYNNAISEADREKLKDGAFEDVLRSAQEGIVISPWVALAIRPRPGVWEY
VRVNVSELAVELLTVPEYLQFKEQLVEEGTNNNFVLELDFEPFNASFPRPSLSKSIGN
GVQFLNRHLSSKLFHDKESMYPLLNFLRAHNYKGMTMMLNDRIRSLSALQGALRKAEE
HLSGLSADTPYSEFHHRFQELGLEKGWGDCAKRSQETIHLLLDLLEAPDPSTLEKFLG
TIPMVFNVVIMSPHGYFAQANVLGYPDTGGQVVYILDQVRAMENEMLLRIKQQGLNIT
PRILIVTRLLPDATGTTCGQRLEKVLGTEHTHILRVPFRTENGIVRKWISRFEVWPYL
ETFTDDVAHEIAGELQANPDLIIGNYSDGNLVACLLAHKMGVTHCTIAHALEKTKYPN
SDLYWKKFEDHYHFSCQFTTDLIAMNHADFIITSTFQEIAGNKDTVGQYESHMAFTMP
GLYRVVHGIDVFDPKFNIVSPGADMSIYFPYSESRKRLTSLHPEIEELLYSEVDNNEH
KFMLKDRNKPIIFSMARLDRVKNLTGLVELYGRNPRLQELVNLVVVCGDHGNPSKDKE
EQAEFKKMFDLIEQYNLNGHIRWISAQMNRVRNGELYRYICDTKGAFVQPAFYEAFGL
TVVESMTCGLPTFATAYGGPAEIIVNGVSGFHIDPYQGDKASALLVEFFEKCQEDPSH
WTKISQGGLQRIEEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYLEMLYALKY
RTMASTVPLAVEGEPSNK"
BASE COUNT 667 a 749 c 743 g 751 t
ORIGIN
1 ttgaggcttg aggagccaag aggaagagga gagcaatggg ggaagctgcc ggcgaccgcg
61 tcctgagccg cctccacagc gtcagggagc gcatcggcga ctccctctcc gcccacccca
121 atgagctcgt cgccgtcttc accaggctgg ttaacctcgg aaagggaatg cttcaggccc
181 accagatcat tgctgagtac aacaacgcaa tctctgaggc tgatcgtgag aagctgaagg
241 acggtgcttt tgaggatgtc ctgaggagtg cacaggaggg gattgttatc tccccatggg
301 ttgcccttgc catccgcccg aggcccggtg tctgggagta tgtgagggtc aatgtgagcg
361 agctcgctgt tgagttgctg acagtccccg agtacttgca gttcaaggaa cagcttgtgg
421 aagaaggcac caacaacaac tttgtgcttg agctggattt cgagccattc aatgcctcct
481 tccctcgtcc ttctctgtcg aagtccattg gcaatggtgt gcagttcctc aacaggcatc
541 tgtcatcgaa gctcttccat gacaaggaga gcatgtaccc actgctcaac ttccttcgtg
601 cacacaacta caagggcatg accatgatgt tgaatgacag aatccgcagt ctcagtgctc
661 tccaaggtgc tctgaggaag gctgaggagc atctttctgg tctttcagca gacacccctt
721 actcagaatt ccaccacagg ttccaggaac ttggtctgga gaagggttgg ggtgactgtg
781 ccaagcgttc ccaggagacc attcacctcc ttttggacct tcttgaggcc cctgatccgt
841 ccaccctcga gaagttcctt ggaacaatcc caatggtgtt caatgttgtc attatgtccc
901 cacacggtta cttcgcgcaa gccaatgtct tgggttaccc tgacactgga gggcaggttg
961 tctacatttt ggaccaagtc cgtgctatgg agaatgagat gcttctgagg atcaagcagc
1021 aaggtctcaa tattacacca cgcatcctta ttgtcaccag gttgctccct gatgcaactg
1081 gcaccacctg cggtcagcgt cttgagaagg tccttggcac cgagcacacc cacatcctac
1141 gtgtgccttt cagaactgaa aatggaattg ttcgcaagtg gatctcacgt tttgaagtct
1201 ggccgtacct ggaaacattc actgatgatg tcgcgcacga aattgctgga gagctccagg
1261 ccaatcctga cttgatcatc ggaaactaca gtgacggaaa ccttgttgca tgcttgcttg
1321 cacacaagat gggtgttacc cattgtacca ttgcccatgc gcttgagaaa accaagtacc
1381 ccaactctga cctctactgg aagaagtttg aggatcacta ccacttctca tgccagttca
1441 caactgactt gattgcgatg aaccacgctg acttcatcat caccagtacc ttccaagaga
1501 ttgccggaaa caaggacact gttggtcagt atgagtctca catggcattc accatgcctg
1561 gtctgtaccg tgttgtccac ggtattgatg tttttgaccc gaagtttaac attgtctcgc
1621 ctggtgcgga catgtccatc tacttccctt actctgagtc tcgtaagagg ctcacctccc
1681 tccacccaga gattgaggag ttgctctaca gcgaagttga caacaacgag cacaagttta
1741 tgctgaagga caggaacaag ccaatcatct tctccatggc tcgtcttgac cgtgtcaaga
1801 acttgactgg tctggttgag ctgtatggtc gcaaccctcg cctgcaagag ctggttaacc
1861 ttgtggttgt ctgtggtgac catggcaacc catctaagga caaggaggag caggctgagt
1921 tcaagaagat gtttgacctt attgagcaat acaacttgaa tggccacatc cgctggatct
1981 ccgcgcagat gaaccgtgtc cgcaacggtg agctctaccg ttacatctgc gacaccaagg
2041 gtgcttttgt gcagcccgct ttctacgagg cattcggtct cactgttgtt gagtccatga
2101 cctgtggtct cccgacattc gcaaccgcct atggtggtcc agctgagatc atcgtgaacg
2161 gagtgtctgg cttccacatt gacccatacc agggtgacaa ggcctcggcg ctgctcgttg
2221 agttctttga gaagtgccag gaagacccca gccactggac caagatctcg cagggcggtc
2281 ttcagcgtat cgaggagaaa tacacctgga agctctactc tgagaggctg atgaccctca
2341 ccggcgtcta cggattctgg aagtacgtct cgaacctgga gaggcgtgaa acccgccgct
2401 accttgagat gctgtatgcc ctcaagtacc gcaccatggc tagcaccgtc ccgttggccg
2461 tcgagggcga gccgtcgaac aagtgagctg gccaacatct caggctgaga ctctgaaaga
2521 ggagagcatt ggagtttctt tgctttgttt ccattctctg gtttcagaga tgaaaagaga
2581 agagagatat ttcaggatgc tttgcattcc taggcactgc tctttttcct taagaaagta
2641 aggtcgattg aatttgggag ttttctagtt tgatttagtt gggggtgagt tcagtggaat
2701 gtggtgtgtg gttggtgctc tgtctcctct tgttattggg atgttaccta tgaataatag
2761 aaacggcctt ggtgccgttt ctgcaataat atattgtagc atccttgttt ccaagaaaaa
2821 attgtcactg aaatgctcac ttctccttgg ggttatctta ctgtttattt atgtttcacc
2881 aatcgaaatc cttactgtgc atctttgact
//