LOCUS AK088649 1319 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430022K12 product:CD8 antigen, beta chain, full insert sequence. ACCESSION AK088649 VERSION AK088649.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1319) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=E430022K12 FEATURES Location/Qualifiers source 1..1319 /cell_type="thymic cells" /clone="E430022K12" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:E430022K12" /db_xref="MGI:2427546" /db_xref="taxon:10090" /dev_stage="2 days neonate" /mol_type="mRNA" /organism="Mus musculus" /strain="NOD" /tissue_type="thymus" CDS 70..711 /codon_start=1 /note="CD8 antigen, beta chain (MGD|MGI:88347 GB|NM_009858, evidence: BLASTN, 98%, match=1295)" /note="putative" /protein_id="BAC40477.1" /transl_table=1 /translation="MQPWLWLVFSMKLAALWSSSALIQTPSSLLVQTNHTAKMSCEVK SISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSSRPFL SIMNVKPEDSDFYFCATVGSPKMVFGTGTKLTVVDVLPTTAPTKKTTLKMKKKKQCPF PHPETQKGLTCSLTTLSLLVVCILLLLAFLGVAVYFYCVRRRARIHFMKQFHK" BASE COUNT 318 a 354 c 319 g 328 t ORIGIN 1 tagctggctc ctaacctacc tttcagttga cagagcactg aggggaacag tgtccccaaa 61 agcgccaaga tgcagccatg gctctggctg gtcttcagta tgaagctggc agctctctgg 121 agcagctctg ccctcattca gaccccttcg tccctgctgg ttcaaaccaa ccatacggca 181 aagatgtcct gtgaggttaa aagcatctct aagttaacaa gcatctactg gctgcgggag 241 cgccaggacc ccaaggacaa gtactttgag ttcctggcct cctggagttc ttccaaagga 301 gttttgtatg gtgaaagtgt ggacaagaaa agaaatataa ttcttgagtc ttcagactca 361 agccggccct ttctcagtat catgaatgtg aagccagagg acagtgactt ctacttctgc 421 gcgacggttg ggagccccaa gatggtcttt gggacaggga cgaagctgac tgtggttgat 481 gtccttccta caactgcccc aaccaagaag actaccctga agatgaagaa gaagaagcaa 541 tgcccgttcc cccacccaga gacccagaag ggcctgacat gcagccttac caccctcagc 601 ctgctggtag tctgcatcct gcttctgctg gcattcctcg gagtggccgt ctacttttac 661 tgtgtgcgga ggagagcccg aattcacttc atgaaacagt ttcacaaatg atcagcgccc 721 acaacactga tagcctgcta gcaataaaag gactgtaact caatcaaagc aagatctgga 781 ctagtgagag acagcgcatt caggactgga gaggcccttg cccttgctca agctgcctgc 841 tttgaactgc tgcaagctct gtgtgtggtt tggggtctca caaggaaggc ctcagaaccc 901 aagctcacgc acagagtggc tgaagaacca agaactccca cgccaccatg tactcttctt 961 ggactgggcc ttggacagtg gccttccagc cactgtcttt gtcagttgct tggtaggaca 1021 gccttattga ctctttggcc tttcatggaa aagagctagc cgggcagccc tggagaagac 1081 tgcaaatcct cacacagaga agccacctca tgaataaggt ttcctgcaaa cagtttctgg 1141 gctctcagca gccatcttac tttctcaggc cttgccgtgg gtttgggagg ccgttggctc 1201 aggagacaga cttctacttc atctcctagt aggaagtttc ttaagcttca cttcttctct 1261 ctcgtggctt atatatttct tctctcactc tctgcccttt taatgaaaat gttttggct //