LOCUS AK075233 3899 bp mRNA linear HUM 03-JUL-2008 DEFINITION Homo sapiens cDNA FLJ90752 fis, clone PLACE3000181, highly similar to Homo sapiens protocadherin 1 (cadherin-like 1) (PCDH1), transcript variant 2, mRNA. ACCESSION AK075233 VERSION AK075233.1 KEYWORDS FLI_CDNA; oligo capping; fis (full insert sequence). SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3899) AUTHORS Isogai,T. and Otsuki,T. TITLE Direct Submission JOURNAL Submitted (25-MAR-2002) to the DDBJ/EMBL/GenBank databases. Contact:Takao Isogai Helix Research Institute, Genomics Laboratory; 1532-3 Yana, Kisarazu, Chiba 292-0812, Japan E-mail :flj-cdna@nifty.com REFERENCE 2 AUTHORS Isogai,T., Ota,T., Nishikawa,T., Hayashi,K., Otsuki,T., Sugiyama,T., Suzuki,Y., Nagai,K., Sugano,S., Ishii,S., Kawai-Hio,Y., Saito,K., Yamamoto,J., Wakamatsu,A., Nakamura,Y., Kojima,S., Nagahari,K., Masuho,Y., Ono,T., Okano,K., Yoshikawa,Y., Aotsuka,S., Sasaki,N., Hattori,A., Okumura,K., Iwayanagi,T. and Ninomiya,K. TITLE NEDO human cDNA sequencing project JOURNAL Unpublished (2002) REFERENCE 3 AUTHORS Otsuki,T., Ota,T., Nishikawa,T., Hayashi,K., Suzuki,Y., Yamamoto,J., Wakamatsu,A., Kimura,K., Sakamoto,K., Hatano,N., Kawai,Y., Ishii,S., Saito,K., Kojima,S., Sugiyama,T., Ono,T., Okano,K., Yoshikawa,Y., Aotsuka,S., Sasaki,N., Hattori,A., Okumura,K., Nagai,K., Sugano,S. and Isogai,T. TITLE Signal Sequence and Keyword Trap in silico for Selection of Full-Length Human cDNAs Encoding Secretion or Membrane Proteins from Oligo-Capped cDNA Libraries JOURNAL DNA Res. 12, 117-126 (2005) COMMENT NEDO human cDNA sequencing project supported by Ministry of Economy, Trade and Industry of Japan; cDNA full insert sequencing: Research Association for Biotechnology; cDNA library construction: Institute of Medical Science, University of Tokyo, Laboratory of Genome Structure, Human Genome Center; cDNA 5'- & 3'-end one pass sequencing and clone selection: Helix Research Institute (supported by Japan Key Technology Center etc.). FEATURES Location/Qualifiers source 1..3899 /clone="PLACE3000181" /clone_lib="PLACE3" /db_xref="H-InvDB:HIT000082268" /db_xref="taxon:9606" /mol_type="mRNA" /note="cloning vector: pME18SFL3" /organism="Homo sapiens" /tissue_type="placenta" CDS 220..3231 /codon_start=1 /note="highly similar to Homo sapiens protocadherin 1 (cadherin-like 1) (PCDH1), transcript variant 2, mRNA" /protein_id="BAG52090.1" /translation="MGNLDRERWDSYDLTIKVQDGGSPPRASSALLRVTVLDTNDNAP KFERPSYEAELSENSPIGHSVIQVKANDSDQGANAEIEYTFHQAPEVVRRLLRLDRNT GLITVQGPVDREDLSTLRFSVLAKDRGTNPKSARAQVVVTVKDMNDNAPTIEIRGIGL VTHQDGMANISEDVAEETAVALVQVSDRDEGENAAVTCVVAGDVPFQLRQASETGSDS KKKYFLQTTTPLDYEKVKNYTIEIVAVDSGNPPLSSTNSLKVQVVDVNDNAPVFTQSV TEVAFPENNKPGEVIAEITASDADSGSNAELVYSLEPEPAAKGLFTISPETGEIQVKT SLDREQRESYELKVVAADRGSPSLQGTATVLVNVLDCNDNDPKFMLSGYNFSVIENMP ALSPVGMVTVIDGDKGENAQVQLSVEQDNGDFVIQNGTGTILSSLSFDREQQSTYTFQ LKAVDGGVPPRSAYVGVTINVLDENDNAPYITAPSNTSHKLLTPQTRLGETVSQVAAE DFDSGVNAELIYSIAGGNPYGLFQIGSHSGAITLEKEIERRHHGLHRLVVKVSDRGKP PRYGTALVHLYVNETLANRTLLETLLGHSLDTPLDIDIAGDPEYERSKQRGNILFGVV AGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPKPSGKASKGNKSKGKKS KSPKPVKPVEDEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPPGSPDLGRHYRSNSP LPSIQLQPQSPSASKKHQVVQDLLPANTFVGTGDTTSTGSEQYSDYSYRTNPPKYPSK QLPHRRVTFSATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLGPLALPEDHYE RTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQSSPSRRTKSS ALKLSTFVPYQDRGGQEPAGAGSPSPPEDRNTKTAPVRLLPSYSAFSHSSHDSCKDSA TLEEIPLTQTSDFPPAATPASAQTAKREIYL" BASE COUNT 849 a 1249 c 1066 g 735 t ORIGIN 1 aatgacaaca cacccaactt cgcctcacca gtcatcactc tggccatccc tgagaacacc 61 aacatcggct cactcttccc catcccgctg gcttcagacc gtgatgctgg tcccaacggt 121 gtggcatcct atgagctgca ggctgggcct gaggcccagg agctatttgg gctgcaggtg 181 gcagaggacc aggaggagaa gcaaccacag ctcattgtga tgggcaacct ggaccgtgag 241 cgctgggact cctatgacct caccatcaag gtgcaggatg gcggcagccc cccacgcgcc 301 agcagtgccc tgctgcgtgt caccgtgctt gacaccaatg acaacgcccc caagtttgag 361 cggccctcct atgaggccga actatctgag aatagcccca taggccactc ggtcatccag 421 gtgaaggcca atgactcaga ccaaggtgcc aatgcagaaa tcgaatacac attccaccag 481 gcgcccgaag ttgtgaggcg tcttcttcga ctggacagga acactggact tatcactgtt 541 cagggcccgg tggaccgtga ggacctaagc accctgcgct tctcagtgct tgctaaggac 601 cgaggcacca accccaagag tgcccgtgcc caggtggttg tgaccgtgaa ggacatgaat 661 gacaatgccc ccaccattga gatccggggc atagggctag tgactcatca agatgggatg 721 gctaacatct cagaggatgt ggcagaggag acagctgtgg ccctggtgca ggtgtctgac 781 cgagatgagg gagagaatgc agctgtcacc tgtgtggtgg caggtgatgt gcccttccag 841 ctgcgccagg ccagtgagac aggcagtgac agcaagaaga agtatttcct gcagactacc 901 accccgctag actacgagaa ggtcaaaaac tacaccattg agattgtggc tgtggactct 961 ggcaaccccc cactctccag cactaactcc ctcaaggtgc aggtggtgga cgtcaatgac 1021 aacgcacctg tcttcactca gagtgtcact gaggtcgcct tcccggaaaa caacaagcct 1081 ggtgaagtga ttgctgagat cactgccagt gatgctgact ctggctctaa tgctgagctg 1141 gtttactctc tggagcctga gccggctgct aagggcctct tcaccatctc acccgagact 1201 ggagagatcc aggtgaagac atctctggat cgggaacagc gggagagcta tgagttgaag 1261 gtggtggcag ctgaccgggg cagtcctagc ctccagggca cagccactgt ccttgtcaat 1321 gtgctggact gcaatgacaa tgaccccaaa tttatgctga gtggctacaa cttctcagtg 1381 atagagaaca tgccagcact gagtccagtg ggcatggtga ctgtcattga tggagacaag 1441 ggggagaatg cccaggtgca gctctcagtg gagcaggaca acggtgactt tgttatccag 1501 aatggcacag gcaccatcct atccagcctg agctttgatc gagagcaaca aagcacctac 1561 accttccagc tgaaggcagt ggatggtggc gtcccacctc gctcagctta cgttggtgtc 1621 accatcaatg tgctggacga gaatgacaac gcaccctata tcactgcccc ttctaacacc 1681 tctcacaagc tgctgacccc ccagacacgt cttggtgaga cggtcagcca ggtggcagcc 1741 gaggactttg actctggtgt caatgctgag ctgatctaca gcattgcagg tggcaaccct 1801 tatggactct tccagattgg gtcacattca ggtgccatca ccctggagaa ggagattgag 1861 cggcgccacc atgggctaca ccgcctggtg gtgaaggtca gtgaccgcgg caagccccca 1921 cgctatggca cagccttggt ccatctttat gtcaatgaga ctctggccaa ccgcacgctg 1981 ctggagaccc tcctgggcca cagcctggac acgccgctgg atattgacat tgctggggat 2041 ccagaatatg agcgctccaa gcagcgtggc aacattctct ttggtgtggt ggctggtgtg 2101 gtggccgtgg ccttgctcat cgccctggcg gttcttgtgc gctactgcag acagcgggag 2161 gccaaaagtg gttaccaggc tggtaagaag gagaccaagg acctgtatgc ccccaagccc 2221 agtggcaagg cctccaaggg aaacaaaagc aaaggcaaga agagcaagtc cccaaagccc 2281 gtgaagccag tggaggacga ggatgaggcc gggctgcaga agtccctcaa gttcaacctg 2341 atgagcgatg cccctgggga cagtccccgc atccacctgc ccctcaacta cccaccaggc 2401 agccctgacc tgggccgcca ctatcgctct aactccccac tgccttccat ccagctgcag 2461 ccccagtcac cctcagcctc caagaagcac caggtggtac aggacctgct acctgcaaac 2521 acattcgtgg gcaccgggga caccacgtcc acgggctctg agcagtactc cgactacagc 2581 taccgcacca acccccccaa ataccccagc aagcagttac ctcaccgccg cgtcaccttc 2641 tcggccacca gccaggccca ggagctgcag gacccatccc agcacagtta ctatgacagt 2701 ggactggagg agtctgagac gccgtccagc aagtcatcct cagggcctcg actcggtccc 2761 ctggccctgc ctgaggatca ctatgagcgc accacccctg atggcagcat aggagagatg 2821 gagcaccccg agaatgacct tcgccctttg cctgatgtcg ccatgacagg cacatgtacc 2881 cgggagtgca gtgagtttgg ccactctgac acatgctgga tgcctggcca gtcatctccc 2941 agccgccgga ccaagagcag cgccctcaaa ctctccacct tcgtgcctta ccaggaccga 3001 ggagggcagg agcctgcggg cgccggcagc cccagccccc cggaagaccg gaacaccaaa 3061 acggcccccg tgcgcctcct gccctcctac agtgccttct cccacagtag ccatgattcc 3121 tgcaaggact cggccacctt ggaggaaatc cccctgaccc agacctcgga cttcccaccc 3181 gcagccacac cggcatctgc ccagacggcc aagcgcgaga tctacctgtg agccccctac 3241 tggccggccg gcccccctcc cccagccgcc ggccagctcc caaatggccc attccagggc 3301 ctcactctcc accccttcag cgtggacttc ctggccaggg ccccaagtgg gggtatcact 3361 gacctcatga ccacgctggc ccttctccca tgcagggtcc aggtcctctc ccctcatttc 3421 catctcccag cccccagggg ccccttcccc tttatggggc ttcccccagc tgatgcccaa 3481 gagggctcct ctgcaatgac tgggctcctt cccttgactt ccagggagca ccccctcgat 3541 ttgggcagat ggtggaatca agggtgggca gcgtacttct aactcattgt ttccctcatg 3601 gccgaccagg gcggggatag catgcccaat tttagccctg aagcagggct gaactgggga 3661 gcccctttcc ctgggagctc ccagaggaaa ctcttgacca ccagtggctc cctgaagggc 3721 ttttgttacc aaaggtgggg tagggacggg ggtgggagtg gagcggaggc cttgttttcc 3781 cgtgctgctc ctggactggc ccacctgcct gccacatgcc cacgcctagt cccatctggg 3841 cccccattcc ctgctggtca tgcagtgtct gtatataagg accttggaat gacgtcccc //