LOCUS AK073805 2504 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033069I02, full insert
sequence.
ACCESSION AK073805
VERSION AK073805.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2504)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2504
/clone="J033069I02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 112..2226
/db_xref="Osa1:LOC_Os01g68370"
/db_xref="RAP-DB:Os01g0911700"
/note="(RAP Annotation release2) Similar to Regulatory
protein viviparous-1"
/note="(Rice Genome Annotation Project) protein
viviparous, putative, expressed"
/note="mapping to R01-TIGRv4S1-001834R (Chr.1: short
arm=40050032, long arm=40053832, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG93647.1"
/translation="MDASAGSSAPAAEIRGEAARDDVFFADDTFPLLPDFPCLSSPSS
STFSSSSSSNSSSAFTTAAGGGCGGEPSEPASAADGFGELADIDQLLDLASLSVPWEA
EQPLFPDDVGMMIEDAMSGQPHQADDCTGDGDTKAVMEAAGGGDDAGDACMEGSDAPD
DLPAFFMEWLTSNREYISADDLRSIRLRRSTIEAAAARLGGGRQGTMQLLKLILTWVQ
NHHLQKKRPRTAIDDGAASSDPQLPSPGANPGYEFPSGGQEMGSAAATSWMPYQAFTP
PAAYGGDAMYPGAAGPFPFQQSCSKSSVVVSSQPFSPPTAAAAGDMHASGGGNMAWPQ
QFAPFPVSSTSSYTMPSVVPPPFTAGFPGQYSGGHAMCSPRLAGVEPSSTKEARKKRM
ARQRRLSCLQQQRSQQLNLSQIHISGHPQEPSPRAAHSAPVTPSSAGCRSWGIWPPAA
QIIQNPLSNKPNPPPATSKQPKPSPEKPKPKPQAAATAGAESLQRSTASEKRQAKTDK
NLRFLLQKVLKQSDVGSLGRIVLPKEAEVHLPELKTRDGVSIPMEDIGTSQVWNMRYR
FWPNNKSRMYLLENTGDFVRSNELQEGDFIVIYSDIKSGKYLIRGVKVRRAAQEQGNS
SGAVGKHKHGSPEKPGVSSNTKAAGAEDGTGGDDSAEAAAAAAAGKADGGGCKGKSPH
GVRRSRQEAAAAASMSQMAVSI"
BASE COUNT 487 a 843 c 768 g 406 t
ORIGIN
1 gctcagtaac tgcacccacc tccacaccta cacgcacaca gacaaacaaa gccaaacccc
61 ccgcctcgcc tacatctcgc gctctccgcc ccccgcccgc ctccactctg catggacgcc
121 tccgccggct cgtcggcccc ggcggcggag atcaggggtg aggcggcgag ggatgacgtc
181 tttttcgctg acgatacctt cccgttgctc ccggacttcc cgtgcctttc ttccccgtca
241 agctcaacct tctcgtcgtc gtcgtcgtcg aactcgtcca gcgctttcac caccgcggcg
301 ggagggggtt gcggcggtga gccgtccgag ccggcctcgg cggcggacgg gtttggtgag
361 ctcgccgaca tagaccagct cctcgacctc gcgtcgctgt ccgtcccgtg ggaggccgag
421 cagccgctgt tcccggacga cgttggcatg atgatagagg acgccatgtc cgggcaaccg
481 catcaggcgg acgactgtac cggcgacggc gatacgaagg cggtgatgga ggcggccggg
541 ggaggagacg acgccggcga cgcatgcatg gaggggagtg atgcgcccga cgatctgccg
601 gcgttcttca tggagtggct cacgagcaac cgtgagtaca tctccgccga cgacctccgc
661 agcatccgcc tccgccgatc caccatcgag gcggcggccg cgcggctcgg cggcgggcgc
721 cagggcacca tgcagctgct caagctcatc ctcacctggg tgcagaacca ccacctccag
781 aagaagcgcc cccgcacggc gattgacgac ggcgccgcgt cgtcggaccc tcagctcccc
841 agccccggcg caaaccccgg ctacgagttc ccctccggtg gccaggagat gggctccgcc
901 gccgccacat cctggatgcc ctaccaggcc ttcacgccgc cagccgcgta cggcggcgac
961 gccatgtacc caggcgccgc cggcccgttc cctttccagc agagctgcag caagagcagc
1021 gtggtcgtga gcagccagcc gttctccccg ccgaccgcgg cggcggcggg cgacatgcat
1081 gcgtcgggcg gagggaacat ggcctggccg cagcaattcg cgccgttccc cgtctcctcc
1141 acgagctcct acaccatgcc gtcggtcgtg ccaccgccgt tcaccgccgg attccccggg
1201 cagtactccg gcggccacgc catgtgctct ccacgcctcg ccggagtcga gccgtcctcg
1261 acaaaggagg cccggaagaa gcggatggcg aggcagcgcc gcctctcctg cctgcagcag
1321 caacgtagcc agcagctcaa cctgagccag atccacatct ccggccatcc acaggagccc
1381 tcccctcgcg ccgcgcactc ggcgccggtc accccgtcgt cggccggctg ccggagctgg
1441 ggcatctggc cgccggcggc ccagatcatc cagaatcccc tatcaaacaa gcccaatcct
1501 cctcccgcca cgtcgaagca gccgaaaccc tcgccggaga aaccgaagcc gaagccgcag
1561 gcggcggcga cggccggagc ggagagcctt cagcgctcga cggcttcaga gaagcggcag
1621 gcgaagacgg acaagaacct gcggttcctg ctgcagaagg tgctgaagca gagcgacgtc
1681 gggagcctcg gccgcatcgt gctccccaaa gaagcagagg ttcacctgcc ggagctgaag
1741 acgagggatg gtgtctccat ccccatggaa gacatcggga cgtctcaggt gtggaacatg
1801 cggtaccggt tttggcccaa caacaaaagc aggatgtatc ttctcgaaaa cacaggtgat
1861 tttgttcgtt caaacgagct gcaggagggt gatttcattg tgatctactc cgatatcaag
1921 tcaggcaaat atctgatacg tggtgtgaag gtgaggcgcg cggcgcagga gcaaggcaac
1981 tcgtcggggg cggtaggtaa gcataagcat ggctcgccgg agaaacccgg cgtctcgtcc
2041 aatacaaagg ccgccggcgc cgaggacggc accggcggcg atgacagtgc cgaagccgca
2101 gcggcggcgg cggcaggcaa ggctgacggc ggcggctgca agggcaagtc cccgcacggc
2161 gtgcggcgtt ctcgccagga ggccgccgcc gccgcctcca tgagccagat ggcggttagc
2221 atctgaagaa acagatgaca gcagcagcag caagcttcag tccatttgaa ggttaattat
2281 tagctagcta gctccgtatt ataaccgatg gtaaaacctc ctaaaaaaat taattaagtt
2341 gtgcatgtga atcgtagcgc tagctaggga tgatatttga tcagtaaccc gtagtccccg
2401 taccagtgac gcttaagtac gcatggtttg gttgttcatc gttgaacccc tgtagtgtgt
2461 cgtcgtcctg tacatgcatc gaattatgga attaattaat tacc
//