LOCUS AK068250 4239 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013139B12, full insert sequence. ACCESSION AK068250 VERSION AK068250.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 4239) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..4239 /clone="J013139B12" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..4239 /db_xref="Osa1:LOC_Os12g41900" /db_xref="RAP-DB:Os12g0613200" /note="(RAP Annotation release2) Similar to Histone-lysine N-methyltransferase, H3 lysine-4 specific SET1 (EC 2.1.1.43) (Set1/Ash2 histone methyltransferase complex subunit SET1) (SET-domain-containing protein 1)" /note="(Rice Genome Annotation Project) SET domain containing protein, expressed" /note="mapping to R12-TIGRv4S1-000804R (Chr.12: short arm=25933084, long arm=25942442, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 1243 a 847 c 1073 g 1076 t ORIGIN 1 ggagagagag agaggctcat cgccaatccg accaacgcaa ccactccaac ccaccggcgg 61 cggcggcggc ggcggtgggg cgcggcgacc cggcaccacg cgaccccggc gtcgccatgc 121 cgcactcgcg ctccgattcg gggtcgggtt cccgcggcgc tgacccttgc cgtgggagga 181 agcgcgggag gctgttgatg ctcgaggagg aggaggagga ggaggagtcg gggatggagg 241 ggtgctcggc gccagcatgc ggcgatgtgc ggggggattt cgttggatgg tgttcggacc 301 ggcatcaggt ggcttcctgc agcggcgacc agacgcaaag cgccagcatg tttgccgcga 361 tgcaggagaa cgcctgctcc atcgatagca aaggtgtggt gtgtccgcag tccgggctag 421 ggtattcagc tggccagaac gggacgcacg gtggtggcgg gtctatgctg catcagaatt 481 tggaaggctg catgtatatg aatcagcttg ggcagatgtg cggcccttat ccacctgaac 541 aactgtacga tggattatcc actggtttct tgcatcgaga ccttgctatt tatgccgttt 601 ttggtgggaa aatggccaac cctgtttcct taggttccct gaaacagttt ctttcacaat 661 ggagttctga ttctgtggtc gccacaagag acgaatcggt ggagagtaag aaaatggccc 721 ctgttaacaa attgattctt cctgataatc tttcaagtga agaatcatgt tggatgtttg 781 aggacgcaga aggccgcagg catgggccac attctcttgc tgaactttct tattggcatc 841 acagtagcta tctacatgac ctttcaatga tttaccatgt tgatagcaag tttggcccat 901 ttacacttgt atcactaatt gattggtgga gtggaggcac agagcattca gaatcttcag 961 ccaatgattc tgggtcactg aacgctttaa tggatgatgt agttgaagat atcagccatc 1021 agctgcatgc tggaattatg aaatcagccc gcaaagtttt tattgatgaa atatttagca 1081 gcgtacttcc agaaatgatt gcttgcagga agacagagaa gcaaatggct gcaaaacgta 1141 agagccaagc tgctaagact gacaatgtga gtaacaagaa tgctttggta cttaagggca 1201 agggtgatgg aacatctact cgtccaaaaa gcctaaactc gtataataat aaagtaccgg 1261 aagatccttc tgtggctgtt caatcaactg caatgcagta tgaatttgct gatatattat 1321 cggcagtttg ggaaacaatt tataacaaat ccatgaagag tatctgggat gaagtactgt 1381 atgatcctgt catggactac tgtgatgcat ggcttaaaag aaaaaatgag tcgaatcttc 1441 tctctacagt tgttcctgga gcctctgata accaaaagat gcaagacaca gatgaaatgt 1501 caccaaaggc aatttgtgat tcagatgctc ctgaaagtga catggatttc cctccaggat 1561 ttggaccaaa tcaggaatct gctgagcatt cccactctgc gtgtgttgag tatgttactg 1621 aaaaaacaga tgggaggtct ggatcaagta tcacgttgtt ttctggcccc ttaggacgag 1681 ttcaggtaat gctggcaaat gaactatatg tggcagcaaa ggaagctttg ttccagcatt 1741 ttgaggaggt catttcagag gagataacaa actgtttgtg cattggattt gaagatgata 1801 ttaatcaaga acgaattcgt acgcctgttc acgcaccaga accatccagt cctcctggaa 1861 tatctgtgca tgaaacgccc agtcctgctg aaatgcctcg agatggaatt tcggatatgg 1921 ctgaaatggc tcgagatgaa atttcagata tggctgtaga tacaataccc tgccctgctg 1981 atatggcggc atctggaaca tcaactgttc ctgaagtgac aacagacaaa ctgatcattc 2041 cttacgtgga acatcaatcg ccctctgcat ctcatgcaag tatatttgaa aagttggatg 2101 cacatgaaga agctgaattg gatgacagtt ttgatgaggt gcctcctgga acagaggctg 2161 gcttagcttc attggtgatt atggagaaaa acaaatacca gccctcaaaa tcagtagact 2221 cagtgcttga catttataga tatactagtt gggcattctt caggcaaata ctgcatgagg 2281 gtgtaatgaa agagtgggca tctctcttct caggtgctct cagcaattgt tttgactcat 2341 ggtatgccag gaaaaatatt gtggctaaaa ccatggatga tacattgaga cccaaagaat 2401 atacttacta caggaagagg aaactgagga aaaactgtga agcatcatca tcagaaaaac 2461 caatggatga gcagctctcc agacctcttc gtgatcttgt tgaatgcaag gttaatatga 2521 aaaatatcca tcgatcaagc aaggctggga tttcgcagag agtttctgtt gtggagaagc 2581 cctccaaaaa gcgtgccaaa ccttcacata atgataatat taatctgaat atccagcagg 2641 acttgaaact cctttccgaa aaggtgccaa agagaaacag gtcttcccat cctaccagta 2701 agcctcttgt tagtagcaaa gtgcctactg aggatagaac tacatcagca atgcctgcaa 2761 agaaaagaaa gcagaaaaac ttggccactg agtccaacct gaagacaaaa gcagtaattt 2821 tatctccaga atcacatggt tgtgaagcgc ctactgagaa aagaactaca gctataatgc 2881 ctgtaaacaa aagaaagaaa aacttgtctg gtgaatccaa actgaaggca aaaccgttaa 2941 caagtccaga atcgtatgtt tgtgaagctc ctattgacaa tagaactaca tctacaatgc 3001 ctgcgcagaa aagaaagcag aaaaacttgt ccaatgagtc caacctgaag aaaaaaccgt 3061 tggttttatg tcctgaatca tatggttgtg caagagcttc tgtgagtgga tgggaatggc 3121 gtgattgggc acgcaatgcc actccatcag aaagagctca agtgagaggc taccgagtga 3181 ggagtattct ctcagctcca gaaaataatg tattgaaaag ttcacaagtt aagggctcat 3241 ctgcaagaac aaaccgggtt aagctacgga atctgttagc agccgctgaa ggcactgacc 3301 tactaaaaat tatgcaatcg aagtcaagga agaagcggct acgttttcaa aggagtaaga 3361 tccatgaatg gggtctggtg gctcttgagt ctattgatgc agaagatttt gtaattgaat 3421 atgttggtga gctgatccgc cgacaggtct cggacatacg cgaggatcaa tacgagaaaa 3481 gtggaattgg aagcagttac cttttccgtt tggacgatga ctatgtggtt gatgctacta 3541 agcgtggtgg gttagcaaga ttcatcaacc attcttgtga tccaaattgc tatacaaaag 3601 taattactgt cgagggccag aagaagattg tcatttatgc aaagaggcgt atatatgctg 3661 gcgaggaact gacttataat tataaatttc cactggagga aaaaaagatt ccatgccatt 3721 gtggttccca gaggtgccgc ggatcaatga attaggaagt aaagtttata agtcaggagg 3781 taactgcaat tgggtgctac cccagtatgt atgtgtcatg cgtgcttgtc gattgtactg 3841 ggcagaagtt cactgcagaa atgttcttgg atttactgac aggatggtaa ttgtgtagca 3901 aggttagatg gactaattcg ggctatccag aggaaggtaa agcgctcaag tgtggactga 3961 tggacttgtt ggttgcctta gtgtgtctcc tgaacgaggt tcgtgtttac ttgctgacaa 4021 ggtacatgga tacatttaat ctatcatccg tggtgtatgt gtatgtattt cgtccagaaa 4081 aaaaaaagca tccgaatcat gtggtcaggt ggatacagac gtgcatgaat atctgatatc 4141 acaatcgtaa gtatgaattc aagtatttta ccagcttata tgtactttgt gcaggctaac 4201 aacagggcaa aagcaagcca ctaacaacca acccgttcc //