LOCUS AK062135 1557 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-045-F05, full insert
sequence.
ACCESSION AK062135
VERSION AK062135.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1557)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1557
/clone="001-045-F05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 225..1178
/db_xref="Osa1:LOC_Os03g29760"
/note="(Rice Genome Annotation Project) nuclear
transcription factor Y subunit A-8, putative, expressed"
/note="mapping to R03-TIGRv4S1-000964F (Chr.3: short
arm=16921702, long arm=16925688, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG88228.1"
/translation="MIMLLQEMENHPVQCMAKTNYDFLARNNYPMKQLVQRNSDGDSS
PTKSGESHQEASAVSDSSLNGQHTSPQSVFVPSDINNNDSCGERDHGTKSVLSLGNTE
AAFPPSKFDYNQPFACVSYPYGTDPYYGGVLTGYTSHAFVHPQITGAANSRMPLPVDP
SVEEPIFVNAKQYNAILRRRQTRAKLEAQNKAVKGRKPYLHESRHHHAMKRARGSGGR
FLTKKELLEQQQQQQQQKPPPASAQSPTGRARTSGGAVVLGKNLCPENSTSCSPSTPT
GSEISSISFGGGMLAHQEHISFASADRHPTMNQNHRVPVMR"
BASE COUNT 426 a 372 c 337 g 422 t
ORIGIN
1 aagtgcttcg atcattttca actgttcatc cagctgagtt tggatgtttg tacaacctaa
61 tccctaatca ttgtatgtgg atactataca aaccgaattc aaggtactaa tttatctagt
121 aacttggctt tctttatgtg ccactgtcag tctgacctga aaattttctg aacttcaaaa
181 taggacagaa aatgtttgtg gatcttgagt aatgccttct aataatgata atgctgttgc
241 aagaaatgga gaatcatcct gtccaatgca tggccaagac caactatgat tttcttgcca
301 ggaataacta tccaatgaaa cagttagttc agaggaactc tgatggtgac tcgtcaccaa
361 caaagtctgg ggagtctcac caagaagcat ctgcagtaag tgacagcagt ctcaacggac
421 aacacacctc accacaatca gtgtttgtcc cctcagatat taacaacaat gatagttgtg
481 gggagcggga ccatggcact aagtcggtat tgtctttggg gaacacagaa gctgcctttc
541 ctccttcaaa gttcgattac aaccagcctt ttgcatgtgt ttcttatcca tatggtactg
601 atccatatta tggtggagta ttaacaggat acacttcaca tgcatttgtt catcctcaaa
661 ttactggtgc tgcaaactct aggatgccat tgcctgttga tccttctgta gaagagccca
721 tatttgtcaa tgcaaagcaa tacaatgcga tccttagaag aaggcaaacg cgtgcaaaat
781 tggaggccca aaataaggcg gtgaaaggtc ggaagcctta cctccatgaa tctcgacatc
841 atcatgctat gaagcgagcc cgtggatcag gtggtcggtt ccttaccaaa aaggagctgc
901 tggaacagca gcagcagcag cagcagcaga agccaccacc ggcatcagct cagtctccaa
961 caggtagagc cagaacgagc ggcggtgccg ttgtccttgg caagaacctg tgcccagaga
1021 acagcacatc ctgctcgcca tcgacaccga caggctccga gatctccagc atctcatttg
1081 ggggcggcat gctggctcac caagagcaca tcagcttcgc atccgctgat cgccacccca
1141 caatgaacca gaaccaccgt gtccccgtca tgaggtgaaa acctcgggat cgcgggacac
1201 gggcggttct ggtttaccct cactggcgca ctccggtgtg cccgtggcaa ttcatccttg
1261 gcttatgaag tatctacctg ataatagtct gctgtcagtt tatatgcaat gcaacctctg
1321 tcagataaac tcttatagtt tgttttattg taagctatga ctgaacgaac tgtcgagcag
1381 atggctaatt tgtatgttgt gggtacagaa atcctgaagc ttttgatgta cctaattgcc
1441 ttttgcttat actcttggtg tatacccatt accaagttgc cttaaaaacc ctccaattat
1501 gtaatcagtc atggttttat agaaccttgc cacatgtaat caatcacctg tttttgt
//