LOCUS AK054502 2967 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN full-length enriched library, clone:E330033F11 product:SIMILAR TO NUCLEAR VCP-LIKE homolog [Homo sapiens], full insert sequence. ACCESSION AK054502 VERSION AK054502.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2967) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=E330033F11 FEATURES Location/Qualifiers source 1..2967 /clone="E330033F11" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:E330033F11" /db_xref="MGI:2426714" /db_xref="taxon:10090" /dev_stage="2 days pregnant adult" /mol_type="mRNA" /organism="Mus musculus" /sex="female" /strain="C57BL/6J" /tissue_type="ovary" CDS <1..2097 /codon_start=1 /note="SIMILAR TO NUCLEAR VCP-LIKE homolog [Homo sapiens] (SPTR|Q96EM7, evidence: FASTY, 90.8%ID, 98.4%length, match=1947)" /note="putative" /note="start codon is not identified" /protein_id="BAC35806.1" /transl_table=1 /translation="SVPLKTPARESEGGWFIDKTPGGKKESLPLDLSDDQSNSKKQDS EIQILKDSSLLESDKKRKGRAKGKGNKRKTENLQEVDGEIEALLQKKAKARSTELQIS NVKFEDVGGNDATLKEVCKMLIHMRHPEVYQHLGVVPPRGVLLHGPPGCGKTLLAHAI AGELDLPILKVAAPEIVSGVSGESEQKLRELFDQAVSNAPCIVFIDEIDAITPKREVA SKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREVCLGI PDEAARERILQTLCRKLRLPETFNFCHLAHLTPGFVGADLMALCREAAMCAVNRVLMK QQAQQKKKPEIEGLPSEGDQEERLGAEPTSETQDELQRLLGLLRDQDPLSEEQMQGLC IELNDFIVALAEVQPSAKREGFVTVPNVTWADIGALEDIRDELIMAILAPVRNPDQFR TLGLGTPAGILLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQV FQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLETRQQVFILAAT NRPDIIDPAILRPGRLDKTLFVGLPPPADRVAILKTITKNGTKPPLDEDVNLETIAND LRCNCYTGADLTALVREASLCALRQEITAQKNGVGAGELKVSHKHFEDAFKKVKPSIS IKDQVMYEALQRSLSQ" BASE COUNT 870 a 634 c 718 g 745 t ORIGIN 1 tccgtgccat tgaagacccc tgcccgagaa tctgagggag gatggtttat tgacaaaact 61 cccggtggaa agaaagaaag tcttcccttg gacctatcag atgaccaaag caactctaaa 121 aagcaggatt ctgagattca gattttaaaa gactcttctc ttttggaaag tgataagaaa 181 aggaaaggta gggcaaaggg caaaggaaac aaaagaaaaa cagagaatct tcaagaagta 241 gatggagaaa tagaagctct tctgcaaaag aaagccaaag caaggagtac agagttgcag 301 atttccaatg tgaagtttga agatgttgga ggcaatgatg caacattaaa agaagtctgc 361 aaaatgctca tacacatgcg ccatccagag gtataccagc accttggtgt cgtgccccct 421 cgtggagttc tcctgcatgg accaccaggc tgtgggaaga cattacttgc acacgcaata 481 gcaggggaac ttgacttgcc gattctgaaa gtggctgctc cagagattgt gtccggagtt 541 tctggagagt ctgagcagaa gctccgtgag ttatttgacc aggctgtgtc aaatgcacca 601 tgtattgttt tcattgatga aattgatgca attaccccca aaagagaagt tgcttcaaaa 661 gatatggaac gaagaattgt agcccagctt ctaacctgca tggatgatct gaataacgtg 721 gcagctacag ctcgggtcct agttattgga gctactaaca ggccagactc attggatcct 781 gctttgagac gtgcaggaag gtttgaccga gaagtctgct tgggtatccc agatgaggca 841 gccagagaaa gaattctcca aacgttgtgc cgaaaactga ggcttccgga aacttttaat 901 ttttgtcact tagcacacct aacaccaggc tttgttggtg ctgatctgat ggctctttgc 961 cgagaggcgg ccatgtgtgc ggtcaatagg gtcttgatga aacaacaggc gcagcagaag 1021 aaaaagcctg agattgaagg tttgccctct gaaggagacc aggaggaaag gctgggagct 1081 gagcccactt ctgaaacaca ggatgaattg caaaggctgt tggggttgct aagagaccaa 1141 gatcccctct cagaggaaca gatgcaagga ctgtgcattg aattgaacga tttcattgtt 1201 gctctagcag aagtccagcc ttctgccaaa agggaaggct ttgtaactgt ccctaatgtg 1261 acatgggctg atattggtgc cctggaagat attagagatg agcttataat ggcaatattg 1321 gcacctgttc gcaacccaga ccagttcaga actcttggtt tggggactcc agctggcatc 1381 ctcctagctg gtcctcctgg gtgtggaaaa actctgctag caaaggctgt ggcaaatgag 1441 tctggactaa attttatatc tgtcaaaggc cctgaattat tgaatatgta tgttggtgag 1501 agtgaacgtg ctgttcgaca agtttttcag cgagccaaga actcagcccc ctgcgtgata 1561 ttttttgatg aagtggatgc tttatgtcct cggagatcag accgagaaac aggtgctagt 1621 gttcgtgtgg tgaatcagct gcttacagag atggatggct tagaaacacg ccagcaagtt 1681 tttattttgg ctgccaccaa tagaccagat atcattgacc ctgccattct gcgcccaggc 1741 cgcctggaca aaacgctctt tgtgggtttg cctcccccag cagaccgtgt tgccatatta 1801 aagactatta caaaaaatgg caccaaacct ccactggatg aagatgtaaa tttggaaaca 1861 attgctaatg accttcgttg taattgctat acgggtgcgg acctcactgc tctggtacgg 1921 gaagcttctc tctgtgccct gagacaagaa ataacagctc agaagaatgg tgttggagca 1981 ggtgagctta aggtcagtca taagcacttt gaagacgctt tcaagaaagt aaaaccatcc 2041 atatcaataa aggatcaagt gatgtatgaa gctctgcaga ggtccctcag tcagtgatgt 2101 ttgcgctacc tggcatggag gaggtgtcta gtgtgtggaa ctcaccacga atcacagtta 2161 ctctggaggg tctactttca gcttgacacc aatgatcctt tttttttttt ttttaaatca 2221 gaaccagtta tctctttatt ttttggaaag taagttggct gtgttagtaa aaccacatct 2281 gctagtgtgg gctgataaac catgtgctag gccccaagaa ccctgagcca ctgtcctgac 2341 cctgctgact gacaggcaag ggacagccac ccaagcccaa taagaggagt aaaaaaagta 2401 gcaaaattgc attcaccact gtctcccagg ctttgaaagg tagcagtcta ggctataaaa 2461 gtctagaagc tctgcatagg gagtgttaag cctgcagcaa aacaacttgt aaaaactcaa 2521 taaattatag atagacttgt aacagatatc tattaacatc tgaaccttct tacaggatca 2581 gtccctcccc tgggcacagg ctcctgcctg gaatacatag caattagaat aatctgtatg 2641 aaaaatacca gttcaccttg aaatttttaa acatctccta aagaaagttc ctatataaat 2701 ctaatccctc acaaaagagg gccgaaggca acaggaaacg ctctctggcg ccattactaa 2761 ctaggagagc tagctgctca tgcgccaagg ggctatgtcc agcctggcag aggccagact 2821 cacggtctca gcaactccct aaatccagca tgaacctctt tcactgttaa taagttacaa 2881 cttaaaatgt ctgaaatacc ctgggactaa atgctgtacc ctgaggttgg ggactggagc 2941 tctgggagtt gataaatata gctttac //