LOCUS AK041334 3229 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 3 days neonate thymus cDNA, RIKEN full-length
enriched library, clone:A630002H24 product:hypothetical
Immunoglobulin and major histocompatibility complex
domain/Immunoglobulin subtype containing protein, full insert
sequence.
ACCESSION AK041334
VERSION AK041334.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3229)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A630002H24
FEATURES Location/Qualifiers
source 1..3229
/clone="A630002H24"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A630002H24"
/db_xref="MGI:2406361"
/db_xref="taxon:10090"
/dev_stage="3 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="thymus"
CDS 19..936
/codon_start=1
/note="hypothetical Immunoglobulin and major
histocompatibility complex domain/Immunoglobulin subtype
containing protein (InterPro|IPR003006
InterPro|IPR003599, evidence: InterPro)"
/note="putative"
/protein_id="BAC30910.1"
/transl_table=1
/translation="MKTVPAMLGTPRLFREFFILHLGLWSILCEKATKRNDEECPVQL
TITRNSKQSARTGELFKIQCPVKYCVHRPNVTWCKHNGTICVPLEVSPQLYTSWEENQ
SVPVFVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHVTERTQNSSEHPLIISDIP
DATNASGPSTMEERPGRTWLLYTLLPLGALLLLLACVCLLCFLKRIQGKEKKPSDLAG
RDTNLVDIPASSRTNHQALPSGTGIYDNDPWSSMQDESELTISLQSERNNQGIVYASL
NHCVIGRNPRQENNMQEAPTEYASICVRS"
BASE COUNT 972 a 633 c 681 g 943 t
ORIGIN
1 tgctgacacg tgctgggaat gaagacagtg cctgccatgc ttgggactcc tcggttattt
61 agggaattct tcatcctcca tctgggcctc tggagcatcc tttgtgagaa agctactaag
121 aggaatgatg aagagtgtcc agtgcaactt actattacga ggaattccaa acagtctgcc
181 aggacaggag agttatttaa aattcaatgt cctgtgaaat actgtgttca tagacctaat
241 gtgacttggt gtaagcacaa tggaacaatc tgtgtacccc ttgaggttag ccctcagcta
301 tacactagtt gggaagaaaa tcaatcagtt ccggtttttg ttctccactt taaaccaata
361 catctcagtg ataatgggtc gtatagctgt tctacaaact tcaattctca agttattaat
421 agccattcag taaccatcca tgtgacagaa aggactcaaa actcttcaga acacccacta
481 ataatatctg acatcccaga tgccaccaat gcctcaggac catccaccat ggaagagagg
541 ccaggcagga cttggctgct ttacaccttg cttcctttgg gggcattgct tctgctcctt
601 gcctgtgtct gcctgctctg ctttctgaaa aggatccaag ggaaagaaaa gaagccttct
661 gacttggcag gaagggacac taacctggtt gatattccag ccagttccag gacaaatcac
721 caagcactgc catcaggaac tggaatttat gataatgatc cctggtctag catgcaggat
781 gaatctgaat tgacaattag cttgcaatca gagagaaaca accagggcat tgtttatgct
841 tctttgaacc attgtgttat tggaaggaat ccaagacagg aaaacaacat gcaggaggca
901 cccacagaat atgcatccat ttgtgtgaga agttaaacct gccactgagc caggcagcct
961 acactgcatg agtgcctgtc aatacctctg tctggacctt cagtttcaaa taaccttcaa
1021 cctggaaagt ttcaattaag atgctctgtg ctggtgctgc gtcttaaagg tccatgaagt
1081 atttagttaa aatttctcct gaaaactttg ggagagtttt gtacaagaca gactcttccc
1141 tgggaaaact catattacga atagcagaat aatagggctt ttaaaattga ccatgtcgca
1201 ccatgtcgta cccaatgtgt gaattcaata ttttctttgg aactaccaaa cagacttaca
1261 ggggagaaag aagcgtgtta tttggatctg ctcactacac attctagaaa aagaatggcc
1321 cagtttgact aactagtcat aaatatagta atgattgtat gctctcagtc agtcatgata
1381 agacaattac ccatgtcaat ctatatagat aatgctttat tatttttttt aatgtgaaag
1441 aaaaattatc ttggactcaa ttcagaaaaa gattagaaag ggtaattggt ataatacaga
1501 tatagcatat gccagataga tgtggtgcca acgatcctta tccccaccag tgagatgctc
1561 accttcagct ggcttgattg agaaagtaag gtaggtagta aagggctcat ccacatatag
1621 tgagtggatt tgcaatcagc gtggtagtgt ttggatcaag attaacgcac atgaatgtga
1681 ttcaatgctg ctggattaat atacatatgg tacgtatggg cctatgaaca agtgtccatg
1741 ggaatggata tattatcaat ctagagcgaa cttttagccc accttttgct ttacgtgaga
1801 gcaagctcaa agggcaattt atgaaaggag aatcttgaat attgagttga tccgtaggga
1861 ctggcatgca ttcattaatg cctgtttctt gattctgagg aagtgaatca gaaaaaatca
1921 tatgtaatga agtagggcct atggagatca ctcaggttta aattctgaca ttgcagctgt
1981 tcaagaagat gattatcagg tgttctgaat ttccggattg agtctaatta cttaaaaata
2041 gctcataatt ttattcatca gcttgaggct tgagttctca gaccctaaaa ctgaataatg
2101 gcatagtctt agtatacagc agattgggcc tgagttagaa gccactggag caaacacata
2161 aactgtctat gtaattgcat gcatatatgt gggtgtgcct gtgcatgtgt gtgctagcat
2221 gcaaatgcaa gatgtgacgc ctggaaataa gacaagagaa accagtcctt ttgctgtgct
2281 ttttttagtt tgcttagaag gtgcaaagta ctagagaaaa tgagtcattt atagaaaata
2341 acacgtagac tggtgagaat ggaagggagt tgagaatgta tccataaaca gtgaataaag
2401 aggccttact acacagcttt tctcacctac tgctcacctc gggttccagt tccctgaatc
2461 tagaacaaca aacaatgttt tcagacatgt tacaaccact tctagttaag cttgttcagg
2521 caggtgcatt tgtgggaatt tatgcaaaaa agaccttaga atagctgctc atcttcaaaa
2581 tagaaacagg aaggatggga gggggatgag tactgcactc tgtctctctt atcagatcaa
2641 caggcaactt aagcaaatct ttcagaattg tctccggctt taaaaggaaa atacttcgct
2701 ctactctgtt taaaacaatc ttttaaaaac gttgtgtgta catgtatatt tgggtatgca
2761 tgtatgtgtg tatatggtgt atgtgcgtgg tgtacacaca tgtgtatgca ggagccagaa
2821 gagaaagtca ggcacccttt tctattgcac tccactttat tctgttaagg gaaggtctct
2881 cattgaacct ggagctctgc tagcaagcag caagccagcg atggatcctc ccatccctga
2941 cccccacatt gctagactat atttgctcat gcccagcttt ttacaaggat gtggagaact
3001 gaaattcagg tcctcatgat tgcataacaa gcactctcac ttactaagca tgttctaata
3061 tgttttacaa tgaaagacgc tgctcaagat ttcacctcaa tgaatgatca attctgtttg
3121 taccttgttt gccaatcaca tagcatttat gctcttattc ctacttagta aatatgtatg
3181 ttgtagctcc tcaaataaat ttgttccagc attattttca tggttacct
//