LOCUS AK041014 1433 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530061A11 product:hypothetical Immunoglobulin and major histocompatibility complex domain/Immunoglobulin subtype containing protein, full insert sequence. ACCESSION AK041014 VERSION AK041014.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1433) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=A530061A11 FEATURES Location/Qualifiers source 1..1433 /clone="A530061A11" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:A530061A11" /db_xref="MGI:2405884" /db_xref="taxon:10090" /dev_stage="adult" /mol_type="mRNA" /organism="Mus musculus" /sex="male" /strain="C57BL/6J" /tissue_type="aorta and vein" CDS 72..914 /codon_start=1 /note="hypothetical Immunoglobulin and major histocompatibility complex domain/Immunoglobulin subtype containing protein (InterPro|IPR003006 InterPro|IPR003599, evidence: InterPro)" /note="putative" /protein_id="BAC30780.1" /transl_table=1 /translation="MEISSGLLFLGHLIVLTYGHPTLKTPESVTGTWKGDVKIQCIYD PLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGDVSLQINT LQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRVRKYNPPRINTEAPTTLHSSLEATTI MSSTSDLTTNGTGKLEETIAGSGRNLPIFAIIFIISLCCIVAVTIPYILFRCRTFQQE YVYGVSRVFARKTSNSEETTRVTTIATDEPDSQALISDYSDDPCLSQEYQITIRSTMS IPAC" regulatory 1411..1416 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 1433 /note="putative" BASE COUNT 417 a 351 c 289 g 376 t ORIGIN 1 gagctaccag cacttccagg ttcttcagca gcaagaggat ggaaggatga atagaagtag 61 cttcaaatag gatggagatc tcatcaggct tgctgttcct gggccaccta atagtgctca 121 cctatggcca ccccacccta aaaacacctg agagtgtgac agggacctgg aaaggagatg 181 tgaagattca gtgcatctat gatcccctga gaggctacag gcaagttttg gtgaaatggc 241 tggtaagaca cggctctgac tccgtcacca tcttcctacg tgactccact ggagaccata 301 tccagcaggc aaagtacaga ggccgcctga aagtgagcca caaagttcca ggagatgtgt 361 ccctccaaat aaataccctg cagatggatg acaggaatca ctatacatgt gaggtcacct 421 ggcagactcc tgatggaaac caagtaataa gagataagat cattgagctc cgtgttcgga 481 aatataatcc acctagaatc aatactgaag cacctacaac cctgcactcc tctttggaag 541 caacaactat aatgagttca acctctgact tgaccactaa tgggactgga aaacttgagg 601 agaccattgc tggttcaggg aggaacctgc caatctttgc cataatcttc atcatctccc 661 tttgctgcat agtagctgtc accatacctt atatcttgtt ccgctgcagg acattccaac 721 aagagtatgt ctatggagtg agcagggtgt ttgccaggaa gacaagcaac tctgaagaaa 781 ccacaagggt gactaccatc gcaactgatg aaccagattc ccaggctctg attagtgact 841 actctgatga tccttgcctc agccaggagt accaaataac catcagatca acaatgtcta 901 ttcctgcctg ctgaacacag tttccagaaa ctaagaagtt cttgctactg aagaaaataa 961 catctgctaa aatgccccta ctaagtcaag gtctactggc gtaattacct gttacttatt 1021 tactacttgc cttcaacata gctttctccc tggcttcctt tcttcttaga caacctaaag 1081 tatctatcta gtctgccaat tctggggcca ttgagaaatc ctgggtttgg ctaagaatgt 1141 actacatgca cctcaagaaa tctagcttct gggcttcacc cagaacaatt ttcttcctag 1201 ggccttcaca actcttctcc aaacagcaga gaaattccat agcagtagag gttctttatc 1261 atgcctccag acagcgtgag tctcagtcct acaaactcag acaagcacat gggtctagga 1321 ttactcctct ttctctaggg ccagatgact tttaattgat attactattg ctacattatg 1381 aatctaatgc acatgtattc ttttgttgtt aataaatgtt taatcatgac atc //