LOCUS AK037780 1667 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
enriched library, clone:A130049E03 product:signaling lymphocyte
activation molecule, full insert sequence.
ACCESSION AK037780
VERSION AK037780.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1667)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A130049E03
FEATURES Location/Qualifiers
source 1..1667
/clone="A130049E03"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A130049E03"
/db_xref="MGI:2402226"
/db_xref="taxon:10090"
/dev_stage="16 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="thymus"
CDS 74..1054
/codon_start=1
/note="putative"
/note="signaling lymphocyte activation molecule
(MGD|MGI:1351314 GB|NM_013730, evidence: BLASTN, 98%,
match=1270)"
/protein_id="BAC29870.1"
/transl_table=1
/translation="MDPKGSLSWRILLFLSLAFELSYGTGGGVMDCPVILQKLGQDTW
LPLTNEHQINKSVNKSVRILVTMATSPGSKSNKKIVSFDLSKGSYPDHLEDGYHFQSK
NLSLKILGNRRESEGWYLVSVEENVSVQQFCKQLKLYEQVSPPEIKVLNKTQENENGT
CSLLLACTVKKGDHVTYSWSDEAGTHLLSRANRSHLLHITLSNQHQDSIYNCTASNPV
SSISRTFNLSSQACKQESSSESSPWMQYTLVPLGVVIIFILVFTAIIMMKRQGKSNHC
QPPVEEKSLTIYAQVQKSGVRSMLTLGSVCHISHRISDSCLAHNHGPAGI"
BASE COUNT 484 a 360 c 424 g 399 t
ORIGIN
1 tgtaagcagc tgtcctgccg agctgagctg agctgagctc acagctgggg accctgtctg
61 cgattgctgg ctaatggatc ccaaaggatc cctttcctgg agaatacttc tgtttctctc
121 cctggctttt gagttgagct acggaacagg tggaggtgtg atggattgcc cagtgattct
181 ccagaagctg ggacaggaca cgtggctgcc cctgacgaat gaacatcaga taaataagag
241 cgtgaacaaa agtgtccgca tcctcgtcac catggcgacg tccccaggaa gcaaatccaa
301 caagaaaatt gtgtcttttg atctctctaa agggagctat ccagatcacc tggaggatgg
361 ctaccacttt caatcaaaaa acctgagcct gaagatcctc gggaacaggc gggagagtga
421 aggatggtac ttggtgagcg tggaggagaa cgtttctgtt cagcaattct gcaagcagct
481 gaagctttat gaacaggtct cccctccaga gattaaagtg ctaaacaaaa cccaggagaa
541 cgagaatggg acctgcagct tgctgttggc ctgcacagtg aagaaagggg accatgtgac
601 ttacagctgg agtgatgagg caggcaccca cctgctgagc cgagccaacc gctcccacct
661 cctgcacatc actcttagca accagcatca agacagcatc tacaactgca ccgcaagcaa
721 ccctgtcagc agtatctcta ggaccttcaa cctatcatcg caagcatgca agcaggaatc
781 ctcctcagaa tcgagtccat ggatgcaata tactcttgta ccactggggg tcgttataat
841 cttcatcctg gttttcacgg caataataat gatgaaaaga caaggtaaat caaatcactg
901 ccagccacca gtggaagaaa aaagccttac tatttatgcc caagtacaga aatcaggggt
961 acgttctatg ctcaccttgg ggagtgtctg tcatatttcg cacaggattt ctgatagctg
1021 ccttgcacac aaccatggtc ctgcagggat ctagagtaga tgaacttaag aaagcagaaa
1081 agtcaagaac aagagctccc ccagtgtcac tggaccctta tattgtttga acttgtagaa
1141 aacactggac aatccagttg cctgtttttt tgtagtaatg agatgaagtt gtaagaacat
1201 gaccttggat actttccagc agtggtattc tagattgaga actcctagaa attctcaaac
1261 ttccttcttg gagtgtgtag gcttggggaa ggagggtgaa gcatgacaaa gctattgtgt
1321 actatactgg cctgatccaa ataaaggcat ctgcagagta cagtcaggaa cagaaaagga
1381 atatcttgct aattctagtc agagagagtt caaatgaaag atgacagcat gttgaatgag
1441 gaatagggaa aaatgcgaag taacatgacc actgaactaa gcagggcggg gatggggaaa
1501 catgagacat gatggatgga gtcagggaac agatgtgtca gcagcgagat ggggagttta
1561 ccctgttaac cttgttaggc tttgttgtct tctagagggt gggaggttta gtccacaatc
1621 tgtccattta taatgtgggg tgagcatatt cttgagtaaa agttatg
//