LOCUS AK032249 3836 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male olfactory brain cDNA, RIKEN full-length
enriched library, clone:6430511E19 product:unclassifiable, full
insert sequence.
ACCESSION AK032249
VERSION AK032249.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3836)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=6430511E19
FEATURES Location/Qualifiers
source 1..3836
/clone="6430511E19"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:6430511E19"
/db_xref="MGI:2395711"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="olfactory brain"
misc_feature 1..3836
/note="putative"
/note="unclassifiable"
BASE COUNT 1100 a 792 c 729 g 1215 t
ORIGIN
1 aaaaagcaga ttctcaattg aagaatgaag agttcctact ggagtgctca catcaacatt
61 ccagagaata ggaattgttt tcagatagga aactataact aattaggaat ggtgacttgt
121 ccgcacctgg tttgttttat ttttaattgg tctttaattt ttttttaaat atggaattct
181 ttggtctatg catttgtacc tggtgccctc aagaggctag aggaaacagt tgaaactcta
241 gggtctagac tacagttgtg agctgccatt ctggtgctgc gattcaaacc agagttccca
301 agagccactg atactcgtaa ctgctgagcc atctctgact cccgcctgct ttcctaagtg
361 agagaagaca agctggcctc cctcccacag gtcagttcta ggcatgactc tagagggagg
421 ggctagctca gggcaagtta agtcctccca caggtcagtt ctaggcatga ctctagaggg
481 aggggctagc tcagggcaag ttaagtcctc ccacaggtca gttctaggca tgactctaga
541 gggagggggc tagctcaggg caagttaagt cctcccacag gtcagttcta ggcatgactc
601 tagagggagg ggctagctca gggcaagtta agtcctccca caggtcagtt ctaggcatga
661 ctctagaggg agggggctag ctcagggcaa gttaagtcct cccacaggtc agttctaggc
721 atgactctag agggaggggg ctagctcagg gcaaattaag ttttgacacc cgtttctatt
781 cctctatcct catgtgctcc ataaacttgt ttactttcaa aaataagagg ctcactgttt
841 tgcccaactc ctgggctcaa gtgatttcct atctcaatag ctaggaccat gccattacac
901 ccttttctgc ccatgcactc ctcaaagaca atgcctcttc atattatgcc atttattaag
961 atgtcctttg ccttgacatg ggtaattttt ggttcttggt ttactccttt gctaaagaac
1021 atattacctc aagaaattga cactgttttg aatgacagaa aactagcatc atatgaattg
1081 aaggcatctg tttttaacat tatgtgaatg gaggagagaa tcatacatgt agtgctcatg
1141 tcgaagtcag agaatgactt agggaagttg ttacaccacg tggttctttg gtattaaacc
1201 cagctcataa agacttcagc agtcagtagc tttacctact ggatctctct ggcccacaag
1261 agagattggc cctctgcctg cccattttct cattttgtag ctcaaaccca gggccttatc
1321 cacaggaaat gttctaccac tgtgcagtct ccacactgag atgaggtctc tgtagcctag
1381 gccagccttt aagttgtgaa cttccctgcc tttgtctcag aaggactggg attacaccac
1441 acctggtcag ttaatctctt tgaaggcaga gttagatgcc tcaaatttta ttaacctttt
1501 aatgtacttt tgccactcag tgaaaaatta agtagaatat aattctcttt aaggcattca
1561 catgatacat gttccttccc aacagaattt agtgtagttt agtgttttcc agaagagcta
1621 agttcagaag ctttacgtta agaaaattac attgtagaat caacctacaa tccactttta
1681 gaagtattct catgtggcct caaatttttc aattttttta aaataggttt tgtgtgtgag
1741 tacctcatgt atatatacat cacatgtctg cctggtagct gcagaggcca aaagaacttg
1801 tgatccacac attgagggtg ctgggatata aaaccaggtt ctttgcaaga acatcaagtg
1861 ctcttaactg ctaaccattt ctttagctct caagactttt agcttttggt tcagaacatg
1921 ttctatcttg taagacttta gttttgattg tggtactttg cagtatagtt ctaaaacttt
1981 tccatctttg ggagctgaag tataattctg gtcatttcta ggatagttag cagtacgtaa
2041 aaataacttg gaggttttta cttgttgact ttgtacaaaa cctactatgt acagtgaatc
2101 taaggctaag ctaaatttgg agatctgggc cacaatctca catttggcct cttacaagga
2161 gaaaatgaga attagaaact tgtcagtttg aaacatgaat accattagtc atcctagaaa
2221 caatactatc ctctgtagat ttcacccatg tcaactaagt ttaatttcag tagtagctct
2281 tatgtcttcc tacttcctgt caacccaatc agttgtacct agcctaggta cccatattat
2341 atccgggaac agttttgtat tttgagacag gattccactg gcctttatta gtcataatgt
2401 atcatgcagg ctctgcctcc caagtactga gattaatgca tgatgtctgg cccatgtaat
2461 gtcttaaatc ttaccatatt tttgtgactt aacctaccaa cactttcttc tattggtaat
2521 ttctctttct tcctatcccc ctgtattttc ttatctcagg actcttcatc cccttctaag
2581 tacttgctag tagctatcag tggtttttca agataaaggg tgtgcagcag gaaatgtggt
2641 ctacattgtt ggatggtaca attcttccat ggcagtgtta atgtatacca tcagttgtac
2701 tgtcccatga tgcatttata atttggtgct gaatggagaa ttaatgttaa ggttttggtt
2761 tttaatgtat atgggagttt ggttttcttc atgaaaattt actctgtgtg tgcctgatac
2821 ccttggagac aaagattccc tagaactgta aatagaaatt gaggtgtatg ttgtgaatca
2881 aactgggatc ctgtggaaga acagcctata ctctaactgt tgagccatct ccaaccctga
2941 ctttcagatt aacaagctct ttaaaattgt agtcatttgt tgttgaggaa aaacttgata
3001 caggacattg ctttcattta aaatgtctaa tattgcctca gaatcataat acagactcct
3061 tagtgtgaac aagaaacgga tttagtctct taaaaatcac tagggtttaa ccatatgtaa
3121 atttttgaaa taatgctgga aagagctcaa cagttaaaga acacaggctg ctcttgcgga
3181 aaaaaacaaa gtctgggtct cagtgcccac acacaactca ctactgactg caactccagt
3241 tccactggac ctaatgccct tttctagcat ccttgggcac caggtacact ggtgatgcac
3301 agacacattg ggaaaaaaaa ctaacacttt taaactgttt caagcctaac tctccagtga
3361 taagcataac aatgttcatt ccattcttag ctatactgta gtaccacttc tataaattat
3421 tcctttaaaa ttctccaata ctttttgata tgcttggttc agtgttaaca tttatcttag
3481 ttaaagacaa aaccaggttt cacactgtac ttttggagtt gctcaatttt attcacaaac
3541 caaagtaccc tttagtgcta taatcaaaga aatcacatga aaaaagcctt ccatctccca
3601 cggaaaaaaa atcacaagtt ttaatactgt atatgtatct tctataaatg gaataatatc
3661 atatctggga gtatggctca taactggcac tgcactcatg ttttaaaaca cacattaaac
3721 ataagggtca cattctaagg tcactcaaga aatacaaacc aagattgttc atcattcagt
3781 ttattacatg tatgaatatt aacatctcat gttacccatc taattcaatc aaaacc
//