LOCUS AK009219 1476 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male tongue cDNA, RIKEN full-length enriched
library, clone:2310008B10 product:unclassifiable, full insert
sequence.
ACCESSION AK009219
VERSION AK009219.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1476)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=2310008B10
FEATURES Location/Qualifiers
source 1..1476
/clone="2310008B10"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:2310008B10"
/db_xref="MGI:1902378"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="tongue"
misc_feature 1..1476
/note="putative"
/note="unclassifiable"
BASE COUNT 374 a 339 c 329 g 434 t
ORIGIN
1 agaaagattt ccaaagaggg ctagggatct aactcgggat agaatgccta cctagcaggg
61 gctgtaagtc ggtgataaaa tgctcaccta gcattcatgt ggacttgcgt gttatcccta
121 gcacttaaaa taaacaggag acaaatctta aattcctagt ttactgtgct gggcttctca
181 tctcaaggtc aggcttaaaa ctcagtgaaa tataaggact gctttaaaga tgttttttat
241 aatcataaat atagatggtg tgtgtatgta aataaagaac ctttggaatg gataacacac
301 aaataagaat cagtttgctc ttcgatgaca gtagctcctt ggaagggttt taagtggcct
361 aagctattgg aattggacac tcagttatta ggatgaatat taggagaaag ataagttttt
421 aggttttaaa agtgtgtgtg tgtgtgtgtc catccacagc ggccagaaga aagtgttaga
481 tccccagaag ctatagtcac agctagttgt gagccacctg ggaaccaaac tcagctcctt
541 tgggatagca gggacacttt caaactgctg agccctccct ctagcctgaa aactaaattc
601 ttagaaggaa acgtgctttt ttttgttttt gttttttgtt ttattttgta tttgtttgtt
661 tgtttgtttt gagacagggt ttctctgtat agccctggct gtcctggaac tcactttgta
721 gaccaggctg gcctcgaact cagaaatccg cctgcctctg actcccaagt cctgggatta
781 aaggtgcgtg ccaccaccac ctggcggaaa agtgcctttt cactggagac tgggttgtga
841 atttgagctg agtccacaga ggatgtacct accccctgga ggtacactct ccgcccatgt
901 aagtttctga aaacctgatg aggaagcatt caagcaagtc gtttgccaac cgatttggca
961 cctgcaccca gaacccagaa tactattctg atggctcagt cacttgtcct tcccagtgac
1021 tctctggttc acaaccccca ccccagcctc ccacaatgct agggagccac tctagttcct
1081 tgcgcatgct cggggcgtct gtcattgatc caggacccta gccttccttt ttgctttttg
1141 tttttagaat aaggtctaac taagttgccc aggttggcct tgaacttctg tatctcagtt
1201 agacctcgat ctttgatcct cctgcctcag cctctggggg agcttgcacc accaggctct
1261 cccggagcca cttcctttta ccagaaggcc ttcaaaaaag attgataacg ctttccatgt
1321 tgaaaatgag ttgcagcacg gaattcccag tacacttggt catttatctg gagtgccatt
1381 cctgccttga gttacaaact gtggggtccc tgacgcatca gaaacagagc tccgaacatg
1441 ataggcattc tgtaaatatt ccttttccaa gtggct
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