LOCUS AK007535 1446 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 10 day old male pancreas cDNA, RIKEN full-length
enriched library, clone:1810018M05 product:similar to
PYRROLINE-5-CARBOXYLATE REDUCTASE 1 [Homo sapiens], full insert
sequence.
ACCESSION AK007535
VERSION AK007535.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1446)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=1810018M05
FEATURES Location/Qualifiers
source 1..1446
/clone="1810018M05"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:1810018M05"
/db_xref="MGI:1901099"
/db_xref="taxon:10090"
/dev_stage="10 day old"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="pancreas"
misc_feature 1..1446
/note="putative"
/note="similar to PYRROLINE-5-CARBOXYLATE REDUCTASE 1
[Homo sapiens] (SPTR|Q96DI6, evidence: FASTY, 84.3%ID,
99.6%length, match=953)"
BASE COUNT 283 a 409 c 463 g 291 t
ORIGIN
1 ggtatttggc ggtggatgct ctgggatact tggggcctct ctagcagttc atctggtgca
61 tcccggtttg aaagctgttc cgagcaattc gggtccatct ttttccacgc gcggacactg
121 accccgggat ccccagagtc cccggatcgg cgctcgccgg gatcctgcgg ccatgagcgt
181 gggtttcatc ggcgcaggcc agctggcctg tgctctggcg cggggcttca cggccgcggg
241 cgtcctgtcg gctcacaaga taatagccag ctccccggat atggacctgc ccacggtgtc
301 tgcgctcagg aggatgggtg tgaatctgac ccgaagcaat aaggacactg tgcggcacag
361 cgacgtcctg ttcctggctg tgaagcccac atcatcccct tcatcctgga tgagattgga
421 gccgacgtgc aggagaggca catcgtggtc tcctgtgcag ccggggtcac catcagttct
481 gtggagaaga agctgatggc tttccagccg gcccccaaag tgatccgctg catgaccaac
541 acgcccgtgg tggtccgaga gggggccacc gtgtatgcca cgggcaccca tgctctggtg
601 gaagacggca agcttttgga gcagctgatg agcagtgtgg gcttctgcac agaggtggag
661 gaagacctca ttgatgctat caccgggctc agcggcagcg cgcctgccta tgcattcatg
721 gccctggacg ccctcgcaga tggtggggtg aagatgggcg tgccgcggcg cctggcggtc
781 agactgggag ctcaggcgtt gctgggagca gctaagatgc tgctggactc agaggaccat
841 ccaggccagc tcaaggacaa cgtctgctcc cctggggggg ccaccatcca tgccctgcac
901 ttcctggaga gtgggggctt ccgctctctg ctcatcaatg cggttgaggc ctcctgtatc
961 cgaaccagag aactgcagtc catggctgac caagaaaagg tgtctcctgc tgcccttaag
1021 aagacccttc tggacagagt gaagctggag tcacccacgg tgtccacgct ggccccaccc
1081 agctcaggga aactccttac aagaaacccc gcccagggaa gcaagaagga gtgaggagga
1141 ctctgtaggg tgtccctgtc ccctgtagta cagggagggg caggctcagg tctgggggtg
1201 aagctgctta catctgttca cctggtgcca ccgagtcctt ctcctgtccc gtggcagaag
1261 gtgctctgaa gaggcggctg atgccagaag tcagcatgcc tctctgagag aggtggaggc
1321 cttagagtta gcatccccct cagcggaagt ctgtggagag ctttagttag atccgaggct
1381 gcttcagatt gatctccagg tgaggtgaga ggaaacggga atcctctgaa ttaaaaacac
1441 gcaagg
//