LOCUS AK007013 1092 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male testis cDNA, RIKEN full-length enriched
library, clone:1700086D15 product:hypothetical protein, full
insert sequence.
ACCESSION AK007013
VERSION AK007013.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1092)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=1700086D15
FEATURES Location/Qualifiers
source 1..1092
/clone="1700086D15"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:1700086D15"
/db_xref="MGI:1907430"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="testis"
CDS 51..506
/codon_start=1
/note="hypothetical protein (evidence:
ProCrest,decoder,NCBI CDS Predictor,Longest-ORF)"
/note="putative"
/protein_id="BAB24827.1"
/transl_table=1
/translation="MAGISHLMPVLIVKLCQISAALGPGLWSEDSPFHPRPFWIPPFV
SEVEEQDTRLWPESRGKPAAYSTCCRSLAEMLIEDRLHCVFQMNQVLFIDPLTRWGNG
ASAEREREREKKKVPFEGSLPSKEGKSEVGVFTKAFGLLLPQHRNQAAT"
regulatory 1074..1079
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 1092
/note="putative"
BASE COUNT 289 a 267 c 283 g 253 t
ORIGIN
1 gagtgacctc tttccggtag aaaccaagaa catgatttgt ggtatcagta atggcgggta
61 tctcccattt gatgcctgtg ctaatagtca aactgtgcca gatctcagca gctctcggcc
121 ctggcctgtg gagtgaggac agccctttcc accccaggcc attctggatt ccaccatttg
181 tctctgaggt ggaagaacag gacacaagac tgtggcctga atcgagaggc aagcctgcag
241 cctacagtac ctgttgcagg agcttggctg agatgctcat tgaggatcgt cttcattgtg
301 tcttccaaat gaatcaagtg ctgtttatag acccacttac cagatgggga aatggagctt
361 cagcagaaag agagagagag agagagaaaa aaaaggtgcc ctttgaaggt tctttgcctt
421 caaaggaagg caagtcggaa gtcggagtat ttacaaaagc ctttgggctg cttcttcccc
481 agcacaggaa ccaagcagca acctaacaac tgtgcaaaag gatcaagtca agtagagcag
541 cctctggcct caccgtggtc ctcactgtcg cccctgaccc gggtcatcag tgtgtgtgtt
601 cccactgttg atgcaagcac catctgttaa gagtacccca gatttgcaca tttacgtgac
661 agacctccat tctgcccttg ccccactttc tacaccaggg cagggcaggg cagcctggtg
721 gctgctgctt gcctagcccg tgagggaaga caggagagca cccaggtccc ccctccccgc
781 ctgtgcttta atgactgcag tggggaaaca gaatgtctaa cattaacaga gtcaggaagt
841 aagttctgca ttgacatagt tgcaactctt tttgtatttt ccgaacttgg gctgatttga
901 agcctgcagg atgaggacac aggatctaga agtgcacgaa ggggtgacag gccaacaata
961 aaaccaacca cataggaaca actggaaggg agtccggaaa gagggaagca gaagcctgca
1021 ggatgaggag tgatttctgc tcttgtacat ttgcaggagt cctgattctt tcaaataaac
1081 actcatttca cc
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