LOCUS AJ011415 5859 bp mRNA linear HUM 07-OCT-2008 DEFINITION Homo sapiens mRNA for plexin-B1 plasma membrane receptor, splice variant R (plexin-B1/SEP gene). ACCESSION AJ011415 VERSION AJ011415.1 KEYWORDS plasma membrane receptor; plexin-B1/SEP gene; semaphorin receptor; splice variant R. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5859) AUTHORS Tamagnone L. JOURNAL Submitted (18-SEP-1998) to the INSDC. Tamagnone L., Molecular Oncology, Institute for Cancer Research, University of Torino, SP 142, Candiolo, Torino, 10060, ITALY. REFERENCE 2 AUTHORS Tamagnone L., Artigiani S., Longati P., Comoglio P.M. TITLE The SEX/plexin receptor family JOURNAL Unpublished. REFERENCE 3 AUTHORS Tamagnone L., Artigiani S., Chen H., He Z., Ming G.L., Song H.L., Chedotal A., Winberg M.L., Goodman C.S., Poo M.M., Tessier-Lavigne M., Comoglio P.M. TITLE Plexins are a large family of receptors for transmembrane, secreted, and GPI-anchored semaphorins in vertebrates JOURNAL Cell 99(1), 71-80(1999). PUBMED 10520995 FEATURES Location/Qualifiers source 1..5859 /db_xref="H-InvDB:HIT000244511" /organism="Homo sapiens" /chromosome="3" /mol_type="mRNA" /cell_line="GTL-16" /cell_type="gastric carcinoma" /db_xref="taxon:9606" CDS 1..5859 /gene="plexin-B1/SEP" /product="plexin-B1/SEP receptor" /function="plasma membrane receptor" /note="splice variant R" /note="extracellular domain sligthly shorter than canonical Sep and acquires an RGD motif at splice junction" /db_xref="GOA:O43157" /db_xref="H-InvDB:HIT000244511.13" /db_xref="HGNC:HGNC:9103" /db_xref="InterPro:IPR001627" /db_xref="InterPro:IPR002165" /db_xref="InterPro:IPR002909" /db_xref="InterPro:IPR008936" /db_xref="InterPro:IPR013548" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR014756" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR016201" /db_xref="InterPro:IPR031148" /db_xref="InterPro:IPR036352" /db_xref="InterPro:IPR041019" /db_xref="InterPro:IPR041362" /db_xref="PDB:2JPH" /db_xref="PDB:2OS6" /db_xref="PDB:2R2O" /db_xref="PDB:2REX" /db_xref="PDB:3HM6" /db_xref="PDB:3OL2" /db_xref="PDB:3SU8" /db_xref="PDB:3SUA" /db_xref="PDB:5B4W" /db_xref="UniProtKB/Swiss-Prot:O43157" /protein_id="CAB56222.1" /translation="MPALGPALLQALWAGWVLTLQPLPPTAFTPNGTYLQHLARDPTS GTLYLGATNFLFQLSPGLQLEATVSTGPVLDSRDCLPPVMPDECPQAQPTNNPNQLLL VSPGALVVCGSVHQGVCEQRRLGQLEQLLLRPERPGDTQYVAANDPAVSTVGLVAQGL AGEPLLFVGRGYTSRGVGGGIPPITTRALWPPDPQAAFSYEETAKLAVGRLSEYSHHF VSAFARGASAYFLFLRRDLQAQSRAFRAYVSRVCLRDQHYYSYVELPLACEGGRYGLI QAAAVATSREVAHGEVLFAAFSSAAPPTVGRPPSAAAGASGASALCAFPLDEVDRLAN RTRDACYTREGRAEDGTEVAYIEYDVNSDCAQLPVDTLDAYPCGSDHTPSPMASRVPL EATPILEWPGIQLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQG SAVSRDLTFDGTFEHLYVMTQSTLLKVPVASCAQHLDCASCLAHRDPYCGWCVLLGRC SRRSECSRGQGPEQWLWSFQPELGCLQVAAMSPANISREETREVFLSVPDLPPLWPGE SYSCHFGEHQSPALLTGSGVMCPSPDPSEAPVLPRGADYVSVSVELRFGAVVIAKTSL SFYDCVAVTELRPSAQCQACVSSRWGCNWCVWQHLCTHKASCDAGPMVASHQSPLVSP DPPARGDGDSAELEGPPAPLILPSSLDYQYDTPGLWELEEATLGASSCPCVESVQGST LMPVHVEREIRLLGRNLHLFQDGPGDNECVMELEGLEVVVEARVECEPPPDTQCHVTC QQHQLSYEALQPELRVGLFLRRAGRLRVDSAEGLHVVLYDCSVGHGDCSRCQTAMPQY GCVWCEGERPRCVTREACGEAEAVATQCPAPLIHSVEPLTGPVDGGTRVTIRGSNLGQ HVQDVLGMVTVAGVPCAVDAQEYEVSSSLVCITGASGEEVAGATAVEVPGRGRGVSEH DFAYQDPKVHSIFPARGPRAGGTRLTLNGSKLLTGRLEDIRVVVGDQPCHLLPEQQSE QLRCETSPRPTPATLPVAVWFGATERRLQRGQFKYTLDPNITSAGPTKSFLSGGREIC VRGQNLDVVQTPRIRVTVVSRMLQPSQGLGRRRRVVPETACSLGPSCSSQQFEEPCHV NSSQLITCRTPALPGLPEDPWVRVEFILDNLVFDFATLNPTPFSYEADPTLQPLNPED PTMPFRHKPGSVFSVEGENLDLAMSKEEVVAMIGDGPCVVKTLTRHHLYCEPPVEQPL PRHHALREAPDSLPEFTVQMGNLRFSLGHVQYDGESPGAFPVAAQVGLGVGTSLLALG VIIIVLMYRRKSKQALRDYKKVQIQLENLESSVRDRCKKEFTDLMTEMTDLTSDLLGS GIPFLDYKVYAERIFFPGHRESPLHRDLGVPESRRPTVEQGLGQLSNLLNSKLFLTKF IHTLESQRTFSARDRAYVASLLTVALHGKLEYFTDILRTLLSDLVAQYVAKNPKLMLR RTETVVEKLLTNWMSICLYTFVRDSVGEPLYMLFRGIKHQVDKGPVDSVTGKAKYTLN DNRLLREDVEYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVP LTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATVALVP CLTKHVLRENQDYVPGERTPMLEDVDEGGIRPWHLVKPSDEPEPPRPRRGSLRGGERE RAKAIPEIYLTRLLSMKGTLQKFVDDLFQVILSTSRPVPLAVKYFFDLLDEQAQQHGI SDQDTIHIWKTNSLPLRFWINIIKNPQFVFDVQTSDNMDAVLLVIAQTFMDACTLADH KLGRDSPINKLLYARDIPRYKRMVERYYADIRQTVPASDQEMNSVLAELSWNYSGDLG ARVALHELYKYINKYYDQIITALEEDGTAQKMQLGYRLQQIAAAVENKVTDL" sig_peptide 1..90 /gene="plexin-B1/SEP" mat_peptide 91..5854 /gene="plexin-B1/SEP" /product="plexin-B1/SEP receptor" /note="splice variant R" BASE COUNT 1105 a 1778 c 1815 g 1161 t ORIGIN 1 atgcctgctc tgggcccagc tcttctccag gctctctggg ccgggtgggt cctcaccctc 61 cagccccttc caccaactgc attcactccc aatggcacgt atctgcagca cctggcaagg 121 gaccccacct caggcaccct ctacctgggg gctaccaact tcctgttcca gctgagccct 181 gggctgcagc tggaggccac agtgtccacc ggccctgtgc tagacagcag ggactgcctg 241 ccacctgtga tgcctgatga gtgcccccag gcccagccta ccaacaaccc gaatcagctg 301 ctcctggtga gcccaggggc cctggtggta tgcgggagcg tgcaccaggg ggtctgtgaa 361 cagcggcgcc tggggcagct cgagcagctg ctgctgcggc cagagcggcc tggggacaca 421 caatatgtgg ctgccaatga tcctgcggtc agcacggtgg ggctggtagc ccagggcttg 481 gcaggggagc ccctcctgtt tgtggggcga ggatacacca gcaggggtgt ggggggtggc 541 attccaccca tcacaacccg ggccctgtgg ccgcccgacc cccaagctgc cttctcctat 601 gaggagacag ccaagctggc agtgggccgc ctctccgagt acagccacca cttcgtgagt 661 gcctttgcac gtggggccag cgcctacttc ctgttcctgc ggcgggacct gcaggctcag 721 tctagagctt ttcgtgccta tgtatctcga gtgtgtctcc gggaccagca ctactactcc 781 tatgtggagt tgcctctggc ctgcgaaggt ggccgctacg ggctgatcca ggctgcagct 841 gtggccacgt ccagggaggt ggcgcatggg gaggtgctct ttgcagcttt ctcctcggct 901 gcacccccca ctgtgggccg gcccccatcg gcggctgctg gggcatctgg agcctctgcc 961 ctctgtgcct tccccctgga tgaggtggac cggcttgcta atcgcacgcg agatgcctgc 1021 tacacccggg agggtcgtgc tgaggatggg accgaggtgg cctacatcga gtatgatgtc 1081 aattctgact gtgcacagct gccagtggac accctggatg cttatccctg tggctcagac 1141 cacacgccca gccccatggc cagccgggtc ccgctggaag ccacaccaat tctggagtgg 1201 ccagggattc agctaacagc tgtggcagtc accatggaag atggacacac catcgctttc 1261 ctgggtgata gtcaagggca gctgcacagg gtctacttgg gcccagggag cgatggccac 1321 ccatactcca cacagagcat ccagcagggg tctgcagtga gcagagacct cacctttgat 1381 gggacctttg agcacctgta tgtcatgacc cagagcacac ttctgaaggt tcctgtggct 1441 tcctgtgctc agcacctgga ctgtgcatct tgccttgctc acagggaccc atactgtggg 1501 tggtgcgtgc tccttggcag gtgcagtcgc cgttctgagt gctcgagggg ccagggccca 1561 gagcagtggc tatggagctt ccagcctgag ctgggctgtc tgcaagtggc agccatgagt 1621 cctgccaaca tcagccgaga ggagacgagg gaggttttcc tatcagtgcc agacctgcca 1681 cccctgtggc caggggagtc atattcctgc cactttgggg aacatcagag tcctgccctg 1741 ctgactggtt ctggtgtgat gtgcccctcc ccagacccta gtgaggcccc agtgctgccg 1801 agaggagccg actacgtatc cgtgagcgtg gagctcagat ttggcgctgt tgtgatcgcc 1861 aaaacttccc tctctttcta tgactgtgtg gcggtcactg aactccgccc atctgcgcag 1921 tgccaggcct gtgtgagcag ccgctggggg tgtaactggt gtgtctggca gcacctgtgc 1981 acccacaagg cctcgtgtga tgctgggccc atggttgcaa gccatcagag cccgcttgtc 2041 tccccagacc ctcctgcaag aggtgatgga gactcagcag agcttgaggg ccctcccgcc 2101 cccctcatcc tcccgtccag cctcgactac cagtatgaca cccccgggct ctgggagctg 2161 gaagaggcga ccttgggggc aagctcctgc ccctgtgtgg agagcgttca gggctccacg 2221 ttgatgccgg tccatgtgga gcgggaaatc cggctgctag gcaggaacct gcaccttttc 2281 caggatggcc caggagacaa tgagtgtgtg atggagctgg agggcctcga ggtggtggtt 2341 gaggcccggg tcgagtgtga gccacctcca gatacccagt gccatgtcac ctgccagcag 2401 caccagctca gctatgaggc tctgcagccg gagctccgtg tggggctgtt tctgcgtcgg 2461 gccggccgtc tgcgtgtgga cagtgctgag gggctgcatg tggtactgta tgactgttcc 2521 gtgggacatg gagactgcag ccgctgccaa actgccatgc cccagtatgg ctgtgtgtgg 2581 tgtgaggggg agcgtccacg ttgtgtgacc cgggaggcct gtggtgaggc tgaggctgtg 2641 gccacccagt gcccagcgcc cctcatccac tcggtggagc cactgactgg gcctgtagac 2701 ggaggcaccc gtgtcaccat caggggctcc aacctgggcc agcatgtgca ggatgtgctg 2761 ggcatggtca cggtggctgg agtgccctgt gctgtggatg cccaggagta cgaggtctcc 2821 agcagcctcg tgtgcatcac cggggccagt ggggaggagg tggccggcgc cacagcggtg 2881 gaggtgccgg gaagaggacg tggtgtctca gaacacgact ttgcctacca ggatccgaag 2941 gtccattcca tcttcccggc ccgcggcccc agagctgggg gcacccgtct caccctgaat 3001 ggctccaagc tcctgactgg gcggctggag gacatccgag tggtggttgg agaccagcct 3061 tgtcacttgc tgccggagca gcagtcagaa caactgcggt gtgagaccag cccacgcccc 3121 acgcctgcca cgctccctgt ggctgtgtgg tttggggcca cggagcggag gcttcaacgc 3181 ggacagttca agtatacctt ggaccccaac atcacctctg ctggccccac caagagcttc 3241 ctcagtggag gacgtgagat atgcgtccgt ggccagaatc tggacgtggt acagacgcca 3301 agaatccggg tgaccgtggt ctcgagaatg ctgcagccca gccaggggct tggacggagg 3361 cgtcgcgtgg tcccggagac ggcatgttcc cttggaccct cctgcagtag ccagcaattt 3421 gaggagccgt gccatgtcaa ctcctcccag ctcatcacgt gccgcacacc tgccctccca 3481 ggcctgcctg aggacccctg ggtccgggtg gaatttatcc ttgacaacct ggtctttgac 3541 tttgcaacac tgaaccccac acctttctcc tatgaggccg accccaccct gcagccactc 3601 aaccctgagg accccaccat gccattccgg cacaagcctg ggagtgtgtt ctccgtggag 3661 ggggagaacc tggaccttgc aatgtccaag gaggaggtgg tggctatgat aggggatggc 3721 ccctgtgtgg tgaagacgct gacgcggcac cacctgtact gcgagccccc cgtggagcag 3781 cccctgccac ggcaccatgc cctccgagag gcacctgact ctttgcctga gttcacggtg 3841 cagatgggga acttgcgctt ctccctgggt cacgtgcagt atgacggcga gagccctggg 3901 gcttttcctg tggcagccca ggtgggcttg ggggtgggca cctctcttct ggctctgggt 3961 gtcatcatca ttgtcctcat gtacaggagg aagagcaagc aggccctgag ggactataag 4021 aaggttcaga tccagctgga gaatctggag agcagtgtgc gggaccgctg caagaaggaa 4081 ttcacagacc tcatgactga gatgaccgat ctcaccagtg acctcctggg cagcggcatc 4141 cccttcctcg actacaaggt gtatgcggag aggatcttct tccctgggca ccgcgagtcg 4201 cccttgcacc gggacctggg tgtgcctgag agcagacggc ccactgtgga gcaagggctg 4261 gggcagctct ctaacctgct caacagcaag ctcttcctca ccaagttcat ccacacgctg 4321 gagagccagc gcaccttttc agctcgggac cgtgcctacg tggcatctct gctcaccgtg 4381 gcactgcatg ggaagcttga gtatttcact gacatcctcc gcactctgct cagtgacctg 4441 gttgcccagt atgtggccaa gaaccccaag ctgatgctgc gcaggacaga gactgtggtg 4501 gagaagctgc tcaccaactg gatgtccatc tgtctgtata ccttcgtgag ggactccgta 4561 ggggagcctc tgtacatgct ctttcgaggg attaagcacc aagtggataa ggggccagtg 4621 gacagtgtga caggcaaggc caaatacacc ttgaacgaca accgcctgct cagagaggat 4681 gtggagtacc gtcccctgac cttgaatgca ctattggctg tggggcctgg ggcaggagag 4741 gcccagggcg tgcccgtgaa ggtcctagac tgtgacacca tctcccaggc aaaggagaag 4801 atgctggacc agctttataa aggagtgcct ctcacccagc ggccagaccc tcgcaccctt 4861 gatgttgagt ggcggtctgg ggtggccggg cacctcattc tttctgacga ggatgtcact 4921 tctgaggtcc agggtctgtg gaggcgcctg aacacactgc agcattacaa ggtcccagat 4981 ggagcaactg tggccctcgt cccctgcctc accaagcatg tgctccggga aaaccaggat 5041 tatgtccctg gagagcggac cccaatgctg gaggatgtag atgagggggg catccggccc 5101 tggcacctgg tgaagccaag tgatgagccg gagccgccca ggcctcggag gggcagcctt 5161 cggggcgggg agcgtgagcg cgccaaggcc atccctgaga tctacctgac ccgcctgctg 5221 tccatgaagg gcaccctgca gaagttcgtg gatgacctgt tccaggtgat tctcagcacc 5281 agccgccccg tgccgctcgc tgtgaagtac ttctttgacc tgctggatga gcaggcccag 5341 cagcatggca tctccgacca ggacaccatc cacatctgga agaccaacag cttgcctctg 5401 aggttctgga tcaatataat aaaaaacccg cagtttgtgt tcgacgtgca aacatctgat 5461 aacatggatg cggtgctcct tgtcattgca cagaccttca tggacgcctg caccctggcc 5521 gaccacaagc tgggccggga ctccccgatc aacaaacttc tgtatgcacg ggacattccc 5581 cggtacaagc ggatggtgga aaggtactat gcagacatca gacagactgt cccagccagc 5641 gaccaagaga tgaactctgt cctggctgaa ctgtcctgga actactccgg agacctcggg 5701 gcgcgagtgg ccctgcatga actctacaag tacatcaaca agtactatga ccagatcatc 5761 actgccctgg aggaggatgg cacggcccag aagatgcagc tgggctatcg gctccagcag 5821 attgcagctg ctgtggaaaa caaggtcaca gatctatag //