LOCUS       AF126164                 834 bp    mRNA    linear   HUM 31-AUG-1999
DEFINITION  Homo sapiens alternative HHLA3 protein (HHLA3) mRNA, complete cds.
ACCESSION   AF126164
VERSION     AF126164.1
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 834)
  AUTHORS   Mager,D.L., Hunter,D.G., Schertzer,M. and Freeman,J.D.
  TITLE     Endogenous retroviruses provide the primary polyadenylation signal
            for two new human genes (HHLA2 and HHLA3)
  JOURNAL   Genomics 59 (3), 255-263 (1999)
   PUBMED   10444326
REFERENCE   2  (bases 1 to 834)
  AUTHORS   Mager,D.L., Hunter,D.G., Schertzer,M. and Freeman,J.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-1999) Terry Fox Laboratory, B.C. Cancer Agency,
            601 W. 10th Avenue, Vancouver, BC V5Z1L3, Canada
FEATURES             Location/Qualifiers
     source          1..834
                     /db_xref="H-InvDB:HIT000070534"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="IMAGE:152865"
                     /note="complete sequence of the clone"
     gene            1..834
                     /gene="HHLA3"
                     /gene_synonym="HERV-H LTR-associating gene 3"
     CDS             124..354
                     /gene="HHLA3"
                     /gene_synonym="HERV-H LTR-associating gene 3"
                     /note="product of alternative splicing"
                     /codon_start=1
                     /product="alternative HHLA3 protein"
                     /protein_id="AAD33289.1"
                     /translation="MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPT
                     FTEHLLRAVLSTERGPYPDPKRAFLDLLQERI"
     repeat_region   <292..>373
                     /gene="HHLA3"
                     /gene_synonym="HERV-H LTR-associating gene 3"
                     /rpt_family="MER41"
                     /rpt_type=dispersed
     repeat_region   complement(<374..>425)
                     /rpt_family="LTR10A"
     repeat_region   438..829
                     /gene="HHLA3"
                     /gene_synonym="HERV-H LTR-associating gene 3"
                     /note="LTR of the HERV-H retrovirus"
                     /rpt_type=long_terminal_repeat
     regulatory      806..811
                     /regulatory_class="polyA_signal_sequence"
                     /gene="HHLA3"
                     /gene_synonym="HERV-H LTR-associating gene 3"
                     /note="present within HERV-H retrovirus LTR; utilized by
                     HHLA3 gene"
BASE COUNT          215 a          250 c          175 g          194 t
ORIGIN      
        1 cgcctccgag gcagtgtgtt tccgcccaga gctggagtct cccagctgcc agccgacccc
       61 gaacccgcac tcccgccaac cgcgcttttt gtgggcggtc ggaaaccaca gcctccgttg
      121 gatatgttcg gtgcatgtta taaacaacca cttaaaccct ccggatctga gcctcccgca
      181 gaggaatgca gaatgacgcc acggcacgca ggatgtgatg tcaccgagat gcagaggata
      241 ctcagtcaac caacatttac tgagcatcta cttcgtgccg tcttgtcaac ggaaaggggt
      301 ccctatccag accccaagag agcattcttg gatctcttgc aagaaagaat ttgaggcgaa
      361 tccatagagt aagcaaggca agttacttct atatagaagg gtgcaccctt acagatcaaa
      421 caatgcttag tgatgtgtgt cagacctctg agcccaagca aagccatcat atcccctgtg
      481 acctgcatgt atacatccag atggcctgaa gcaagtgaag aatcacaaaa gaagtgaaaa
      541 gggccggttc ctgccttaac tgatgacatt ccaccattgt gatttgttcc tgccccacct
      601 taactgagcg attaacctgt gaacttcctt ctcctggctc agaagcttcc ccactgagca
      661 ccttgtgacc cccgcccctg cctgccatag aacaaccccc tttgattgta attttccttt
      721 acctacccaa atcctataaa acggccccac ccctatctcc cttcgctgac actctctttg
      781 gactcagcct gcctgcacct aggtgattaa aaagctttat tgtcacgcaa aaaa
//