LOCUS AB169197 1470 bp mRNA linear PRI 06-OCT-2006 DEFINITION Macaca fascicularis testis cDNA, clone: QtsA-17935, similar to human signal recognition particle 9kDa (SRP9), mRNA, RefSeq: NM_003133.1. ACCESSION AB169197 VERSION AB169197.1 KEYWORDS FLI_CDNA; oligo capping; fis (full insert sequence). SOURCE Macaca fascicularis (crab-eating macaque) ORGANISM Macaca fascicularis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca. REFERENCE 1 (bases 1 to 1470) AUTHORS Hashimoto,K., Kusuda,J. and Sugano,S. TITLE Direct Submission JOURNAL Submitted (18-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Katsuyuki Hashimoto National Institute of Infectious Diseases, Division of Genetic Resources; 23-1, Toyama 1-chome, Shinjuku-ku, Tokyo 162-8640, Japan URL :http://www.nih.go.jp/yoken/genebank/ REFERENCE 2 AUTHORS CONSRTM International consortium for macaque cDNA sequencing and analysis TITLE DNA sequences of macaque genes expressed in brain or testis and its evolutionary implications JOURNAL Unpublished (2004) REFERENCE 3 AUTHORS Osada,N., Hirata,M., Tanuma,R., Kusuda,J., Hida,M., Suzuki,Y., Sugano,S., Gojobori,T., Shen,C.-K.J., Wu,C.I. and Hashimoto,K. TITLE Substitution Rate and Structural Divergence of 5'UTR Evolution: Comparative Analysis Between Human and Cynomolgus Monkey cDNAs JOURNAL Mol. Biol. Evol. 22, 1976-1982 (2005) COMMENT The International consortium for macaque cDNA sequencing and analysis consists of: Department of Virology and Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo, Japan; Division of Genetic Resources, National Institute of Infectious Diseases of Japan, Tokyo, Japan; National Health Research Institute, Taipei, Taiwan; Institute of Molecular Biology, Academia Sinica, Taipei, Taiwan; Department of Ecology & Evolution, University of Chicago, Chicago, IL, USA; Center for Information Biology, National Institute of Genetics of Japan, Mishima, Japan. Clone distribution: clone distribution information can be found at: http://www.nih.go.jp/yoken/genebank/ Lab host: TOP10 Vector: pME18S-FL3 (Acc.No. AB009864) R. Site1: DraIII (CACTGTGTG) R. Site2: DraIII (CACCATGTG) Description: 1st strand cDNA was primed with an oligo(dT) primer [ATGTGGCCTTTTTTTTTTTTTTTTT]; double-stranded cDNA was synthesized using specific 5' and 3' primers and amplified by PCR. The PCR product was digested with SfiI and size selection was performed to exclude fragments <1.5kb.The SfiI-digested PCR product was cloned into distinct DraIII sites of pME18S-FL3. XhoI sites just outside the DraIII sites can be used to isolate the cDNA insert. Libraries were constructed by oligo-capping method. Libraries were made from: QccE: cerebellum cortex QnpA: parietal lobe QtrA: temporal lobe right QflA: frontal lobe left QmoA: medulla oblongata QbsA: brain stem QorA: occipital lobe right QtsA: testis Custom primers were used for 5' and 3'-end sequencing. The full-insert sequencing was done by primer-walking method using ABI DNA sequencer. FEATURES Location/Qualifiers source 1..1470 /clone="QtsA-17935" /clone_lib="macaque cDNA library QtsA" /db_xref="taxon:9541" /dev_stage="adult" /mol_type="mRNA" /organism="Macaca fascicularis" /sex="male" CDS 97..357 /note="Homo sapiens signal recognition particle 9kDa (SRP9), mRNA, RefSeq: NM_003133.1" /protein_id="BAE01289.1" /translation="MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTD DLVCLVYKTEQAQDVKKIEKFHSQLMRLMVAKESRNVTMETE" BASE COUNT 469 a 220 c 290 g 491 t ORIGIN 1 tgggactcgc gtcggttggc gactcccgga cgtaggtagt ttgttgggcc gggttctgag 61 gcgttggttc tctttacttt tccacttcag gccacgatgc cgcagtacca gacctgggag 121 gagttcagcc gcgctgccga aaaactttac ctcgctgatc ctatgaaggc acgtgtggtt 181 ctcaaatata ggcattctga tgggaacttg tgtgttaaag taacagatga tttagtttgt 241 ttggtgtata aaacagagca agctcaagat gtaaagaaga ttgagaaatt ccacagtcaa 301 ctaatgcgac ttatggtagc caaggaatcc cgcaatgtta ccatggaaac tgagtgactg 361 gtttgaaatg aagactttgt catgtactta ggaagtaaat atcttgaaat agagaaagtg 421 ttgggacaga aagtacttta tgtaactaag tggactattc agaagcttag aggtcatttt 481 ttgtaatttt ctttttaatg tttacattag agagctaggg atgcaaatgt tttcagttag 541 aaagccttta tttacttttg gaaattgaac aagaaatgca tctgtcttgg aaactttgca 601 gattatttga tgttagataa aacatgtaat tgtttctctg gcaaatttat atcagtaatt 661 tgaaaatgag atattagaaa aaaccaattc ttaaatttag ttcatcttta aaagaacatt 721 aaatataacc attttgttgg atcgatgtgt ttcttttgga gcataaaatg tatgctgttg 781 tgaccaataa atataaaata tggaaattgg aattaactcc acaccatagt atgcattgtt 841 atgcatacgg tgcacctaat tatgtatacc agtgtagtct caattatatc taaaagtagt 901 tgtgactaac aagtatgctt tgccttattt ccacatttaa actacctttt aacgtaaggg 961 atttgtagta tcagcttgtt gagcaatgac tttgaatcga gttttcagtg atcagaagca 1021 gcagttactt gagtgcatga atggaatgat aactataatg tagtgaaacc accatattac 1081 agaaatattt actacatatt ttccatctgt agtttttcag agaggctatg gattagttga 1141 actgtcaaat cttgcatact tctgtgacac ccttgcctgt tttctctaac caaggtgtta 1201 ggtgtgactg tcacaactgt taatgttttc cggtaaacta gaagtataat attatttggt 1261 aattatattt gtaccctaat tttcaccacc taaatgtaat gttgattccc aagaatgaaa 1321 tgaaggcact acattgaaat atgttttgta taaatttgtc atgttgaaca acattttagc 1381 atggtaagtt cccttagcta tatgaatttt ggcatgtttc agagagatca gtaaataaaa 1441 tattacataa aataaaaaaa aaaaaaaaaa //