LOCUS AK103843 3462 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J033148J12, full insert sequence. ACCESSION AK103843 VERSION AK103843.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 3462) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..3462 /clone="J033148J12" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 773..3379 /db_xref="Osa1:LOC_Os12g18729" /note="(Rice Genome Annotation Project) expressed protein" /note="mapping to R12-TIGRv4S1-000385F (Chr.12: short arm=10819905, long arm=10830943, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAG96284.1" /translation="MSGAGQSRGHRLGLHIDSDWPEVLLINDYAVFMGYLSMVVTGTG FLVLTWSTVILLGGFVSMLSNKDFWSLTVITLVQTRIFDVFLNGKVSHIGYSLKRLCK AARFIALPHNHKKVGFRGAVRVLVFTIVLCPLFLLYMFGLFVSPWISLWRLIQQDYGV TAGDSSSKAHLQPALVVLYSLALFQGVLFYYRAISAWEEQKLVKDVADKYMFDTVSRS SVSDYLHEIKVGCENDPSFARGRNLITYAVKLMESTSPDGYLSGARILDTLIKFNRDD ASGSELPGQSMQIYNMIGSASSSPILHNLVQMLDFKSAYDGEIRLRAARIVEHFAGEV RLDKILQGIRCVSSLLELEQKGFQNDHHSSFQEDDGDQLSFEEEDDHQISVKEKDYYP KDYKQMQLTGMQILLKLSYDKNNLFLMSNTDDPALINKIVALITSKGSLHKKQHNEWS CMAELGVKILSRFMRFMYGPTKSNNILWHEISTSSKAIGTLESILECDQCDSVLKKHA IRILKRIFMDTSSAMGEGDRERFIGSLMDMSLHNSNGDFQNLAGVDLALKKQGLSILK EIYLNPSSIMGEGDRERFIGSLMDMFLDNSKGDFGNLPGEDLDLKKQELSILKEICMD PSSFMGEGDREKFIGTLMDMFLHNSKGDLFEKLAGDDLVQICRRSGSSATIILRKYGH DIVDCIADTRSSVYSSMHRKIAAKILNHLCSPYSTDEEHLQNLKEAIIDLIPKVLREA LGWGLTGEEILRVAVSGLEGTQDDDWKLQEALASLCATVFNRIVSKDADLTARFNNIA AGICDQTTKPRMTFADLINEAVKVHRIEFKKPEKPKPAARPELYEFVTAKYTPPHFMF LGEEDPNACCIS" BASE COUNT 873 a 850 c 898 g 841 t ORIGIN 1 gactgctttc cctcctcctc atcctcatct tcatctctag acctcatctt ctccagccac 61 caccgcctcc cttcccaccg gtggtggcag cgggaagaca gcggctcggt tgagcccggc 121 ggggagggca cgatttggta tgggaggagc agcggcgact ccatccggcg gtggatccgc 181 cgcctcctag tcccagctct ctctcccccg atcctcctcc tccccttcct ccaccgccac 241 cacccacccc tctccctctc tcagatctgg tgcgcgggga gcggtggagg ctacggcggc 301 ggcggcggcg agatcggtag cagtgatggt ggagaggacg gatccgatgg cggtggttct 361 cgtcaaccag ttcaaggacg acgacagcag cggctgctgc aacgatggat aggctctggg 421 cggctcctcc actctcctcc cctctctcat atccagtggc tcggggtggt ggggcgtggc 481 cgacgcatcc ggcggcggag ctcggcagaa agaggatggt tctagctctc cgatggttta 541 atattgaaac gtacagccca cccaccacca ccccagtcgt ccccagctaa gcgctccctt 601 gcttgcctca gtagacgagc tgccaactag tagcactcca gcaagcagcg ggtcagcgga 661 gtccggaggg cgcacgtgcg ccgcagcgag gtatcagcat ggccaggcgg cggctggctg 721 gccggccggg ttcggcaagc ggctaagcag gtgtttagcg gaggaaggat cgatgtccgg 781 cgccggacag agccgtggtc atcgccttgg attacacatt gattcggatt ggccagaggt 841 cttgttgatc aatgactatg cggtgttcat ggggtacctg tcgatggttg tcaccgggac 901 ggggttcctg gtgctcacgt ggtccaccgt catcctcctc ggtggattcg tctccatgct 961 atccaacaag gacttctgga gtctcacggt gatcacgctc gttcaaacaa ggatattcga 1021 tgtttttctg aatggaaaag taagccacat tgggtactca ttgaagcgct tgtgcaaggc 1081 cgcacgcttc atcgcgttgc cccataacca taagaaggtt gggttcaggg gtgctgttcg 1141 agtgcttgtc ttcaccatcg tcttgtgtcc gctgttcctg ctctacatgt ttgggctctt 1201 cgtttccccc tggatttcgc tgtggcgtct aatccagcag gattacggcg tgacggccgg 1261 agacagcagc agcaaggcac acctgcagcc tgcgctggtg gttctctact ccctggccct 1321 gttccagggc gtcctcttct actacagggc catctctgct tgggaagaac agaagctagt 1381 gaaagatgtg gccgacaaat acatgtttga tacagtgtcg cgcagttcag tttcggacta 1441 tttacatgag atcaaggtcg gatgtgagaa tgacccgtcc tttgccagag ggaggaacct 1501 gatcacatac gctgtcaagc tgatggaatc cacatcaccg gatgggtacc tttcaggtgc 1561 acggattctt gatacactca tcaagtttaa tagagatgat gcatcgggga gcgaattacc 1621 ggggcagagt atgcagatat acaatatgat tggatctgca tcctccagtc ccatactcca 1681 caacttagtt cagatgctgg atttcaaaag tgcatatgat ggagagatca ggttgcgagc 1741 cgcaaggatt gttgagcact ttgctggtga ggtccgttta gacaaaatcc tgcaggggat 1801 tcgatgtgta tcttccttgc ttgaactcga gcagaaagga tttcagaatg accaccatag 1861 ttctttccaa gaagacgacg gcgaccaact ttcttttgaa gaagaggatg atcaccagat 1921 ttctgtcaaa gaaaaggatt attaccccaa agattataaa cagatgcaac ttacaggcat 1981 gcagatcctt ttaaagctct cctacgacaa gaacaacttg ttcctcatga gcaacacaga 2041 tgatccggcc ttgatcaaca agattgtggc acttataacg tccaagggat cacttcacaa 2101 aaaacaacat aacgaatggt cctgtatggc agagctcggg gtgaagatac taagccgatt 2161 tatgcgattt atgtatggcc ctacaaaatc aaacaatatt ctgtggcatg aaatatcaac 2221 aagcagcaaa gcaatcggca ccttggagag tattcttgag tgtgaccaat gtgactctgt 2281 gctgaagaaa cacgccataa ggattctcaa aaggatattc atggatacat cttcggctat 2341 gggtgaagga gacagagaaa ggttcattgg ctccttgatg gacatgtctc ttcacaacag 2401 taatggtgac tttcaaaatc tggcaggtgt agatctggcg ctcaagaaac aagggttaag 2461 cattctcaaa gaaatatact tgaatccatc ttcgattatg ggcgaaggag acagagaaag 2521 gttcatcggc tccctgatgg acatgtttct tgacaacagt aagggcgact ttggaaatct 2581 gccaggtgaa gatctggacc tcaagaaaca agagttaagt attctcaaag aaatatgcat 2641 ggatccatct tcgtttatgg gcgaaggtga cagagaaaaa ttcatcggca ccctgatgga 2701 catgtttctt cacaacagca agggcgactt gtttgaaaaa ctagcaggtg atgatctggt 2761 gcagatatgt agaagaagtg gaagcagtgc cacgatcata ttgaggaaat atggtcatga 2821 tattgttgat tgtattgctg atactcgttc aagcgtatat agcagcatgc acagaaaaat 2881 tgcagcaaag atcctcaatc atctgtgtag tccctactcc actgacgagg aacatcttca 2941 gaatctgaag gaggccatca ttgatttgat acccaaggtg ctaagagaag cacttggttg 3001 ggggttgaca ggagaagaga tactgcgagt ggcagtttca ggccttgaag gtacccaaga 3061 tgatgactgg aaattgcagg aagcattggc gtccctctgt gcaaccgtgt ttaacagaat 3121 tgtcagcaag gatgcagatt tgactgctcg gttcaacaac atcgccgctg gtatctgcga 3181 ccagacaacg aagcctcgca tgaccttcgc agacctcatc aatgaagctg taaaagttca 3241 tcgcatcgaa tttaaaaaac cagaaaaacc aaaaccagct gccaggccgg aactgtacga 3301 gtttgtgact gcgaaataca ccccgcccca ctttatgttt ttgggcgagg aagatcccaa 3361 cgcgtgttgt atctcttgat aacaccctaa tttgtacttt ctccgtttca caatgtaagt 3421 cattctatta tttcctatat ttatatggat attaatgaat ct //