LOCUS AK066922 1632 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013090N09, full insert
sequence.
ACCESSION AK066922
VERSION AK066922.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1632)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1632
/clone="J013090N09"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1632
/db_xref="Osa1:LOC_Os01g04860"
/db_xref="RAP-DB:Os01g0141600"
/note="(RAP Annotation release2) Protein of unknown
function DUF647 family protein"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R01-TIGRv4S1-000131F (Chr.1: short
arm=2242533, long arm=2247237, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 429 a 368 c 415 g 420 t
ORIGIN
1 gacccttcca cttccactcg ctggcgatag caccgcaccg gagcatatgc tctccgcagc
61 cgccgccgcc gccgccgacg cgagcttcca tggcggagct ccccgacgaa gaagaccgcg
121 gctacgctcc tgcctcgcgt ccccgccggc atccggtgga ggaggaggag actgccgcga
181 gtccgaaaaa gcgagacgtt tgctcgtgga gagataccag gatggggttt ccaagaggta
241 tatactggat ggaaactcta agctacagat tcaccaggag aagaatgaac atatggcgaa
301 cacattggaa gaagaagaaa aagaagaagc aaattcttcg attccccgtg ctattaagga
361 ttttgtactt cccgcggggt ttccagggtc tgtgtcagac gattacctgg aatatatgct
421 atggcaatta ccaacaaatg taacaggatg gatctgtcac acgctggtta catcaaccct
481 tctaaaggct gtaggtgtta ggtcctttac aggaacttca gcagctgctt ctgctgctgc
541 tataagatgg gtatcgaaag atggcatagg ggcttttgga cgtcttctaa ttggtggacg
601 attcggaact ctttttgatg atgacccaaa gaagtggcgg atgtatgccg atttcattgg
661 aagtgctgga agcatcttcg agctcatcac tccgctctat cctggatact tcctcccact
721 tgcgtccttg gggaatctag caaaggctgt aggaagagga tttagggatc catccttccg
781 tgttatccaa aatcacttcg cggaatctgg aaatttaggg gaggttgctg caaaggagga
841 agtatgggaa gtaggagctc agttgttagg cctttctatc ggtgtattta ttatggatac
901 atcaggtata aagtcatcat acccaacact tgctttgaca tggcttggtg tccgtcttct
961 acatctttgg tttcgctatc agtccctatc agttctcaaa ttccgcacag taaggtaaac
1021 ttgaaacgcg ctcggattct cgtgagatca cacgttgcaa agcacacagt tcctgattat
1081 gtgacttgca acgaggagga gaatatttta acatgggaaa gattcttgca tccacaaatt
1141 tcttttggtg ttcccatgga gagaatgctt ggtgaagagg aatccagtga cgtggtggat
1201 agactattga agttgtacag aaatgagaaa tacatcctct ttctcaatcc gattggaaca
1261 ggccgagcag cattttttgt tacattcaag gaggctgcaa cgagcatgtc agtcctcagg
1321 agcctatggc aagcgcattg gcttgacaaa aatcagctaa ggcaggatga tgttttctct
1381 tggctagagg agagcgttct tgcgttggag cacggattcc ctgacttcct caaacagatg
1441 gaaatagctg gctgggatca gaaccagatc atactgaagg tgccaaaaga acccatcatg
1501 gtgatggaac accctgacca agaggtgtaa gatgacaatg ccaactaact aatccattct
1561 actccctccg tgttttttaa atgtaaaggc gtattgactt ttggacatgg cgttagacca
1621 ttcatctcat gc
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