LOCUS AK066922 1632 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013090N09, full insert sequence. ACCESSION AK066922 VERSION AK066922.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1632) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1632 /clone="J013090N09" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..1632 /db_xref="Osa1:LOC_Os01g04860" /db_xref="RAP-DB:Os01g0141600" /note="(RAP Annotation release2) Protein of unknown function DUF647 family protein" /note="(Rice Genome Annotation Project) expressed protein" /note="mapping to R01-TIGRv4S1-000131F (Chr.1: short arm=2242533, long arm=2247237, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 429 a 368 c 415 g 420 t ORIGIN 1 gacccttcca cttccactcg ctggcgatag caccgcaccg gagcatatgc tctccgcagc 61 cgccgccgcc gccgccgacg cgagcttcca tggcggagct ccccgacgaa gaagaccgcg 121 gctacgctcc tgcctcgcgt ccccgccggc atccggtgga ggaggaggag actgccgcga 181 gtccgaaaaa gcgagacgtt tgctcgtgga gagataccag gatggggttt ccaagaggta 241 tatactggat ggaaactcta agctacagat tcaccaggag aagaatgaac atatggcgaa 301 cacattggaa gaagaagaaa aagaagaagc aaattcttcg attccccgtg ctattaagga 361 ttttgtactt cccgcggggt ttccagggtc tgtgtcagac gattacctgg aatatatgct 421 atggcaatta ccaacaaatg taacaggatg gatctgtcac acgctggtta catcaaccct 481 tctaaaggct gtaggtgtta ggtcctttac aggaacttca gcagctgctt ctgctgctgc 541 tataagatgg gtatcgaaag atggcatagg ggcttttgga cgtcttctaa ttggtggacg 601 attcggaact ctttttgatg atgacccaaa gaagtggcgg atgtatgccg atttcattgg 661 aagtgctgga agcatcttcg agctcatcac tccgctctat cctggatact tcctcccact 721 tgcgtccttg gggaatctag caaaggctgt aggaagagga tttagggatc catccttccg 781 tgttatccaa aatcacttcg cggaatctgg aaatttaggg gaggttgctg caaaggagga 841 agtatgggaa gtaggagctc agttgttagg cctttctatc ggtgtattta ttatggatac 901 atcaggtata aagtcatcat acccaacact tgctttgaca tggcttggtg tccgtcttct 961 acatctttgg tttcgctatc agtccctatc agttctcaaa ttccgcacag taaggtaaac 1021 ttgaaacgcg ctcggattct cgtgagatca cacgttgcaa agcacacagt tcctgattat 1081 gtgacttgca acgaggagga gaatatttta acatgggaaa gattcttgca tccacaaatt 1141 tcttttggtg ttcccatgga gagaatgctt ggtgaagagg aatccagtga cgtggtggat 1201 agactattga agttgtacag aaatgagaaa tacatcctct ttctcaatcc gattggaaca 1261 ggccgagcag cattttttgt tacattcaag gaggctgcaa cgagcatgtc agtcctcagg 1321 agcctatggc aagcgcattg gcttgacaaa aatcagctaa ggcaggatga tgttttctct 1381 tggctagagg agagcgttct tgcgttggag cacggattcc ctgacttcct caaacagatg 1441 gaaatagctg gctgggatca gaaccagatc atactgaagg tgccaaaaga acccatcatg 1501 gtgatggaac accctgacca agaggtgtaa gatgacaatg ccaactaact aatccattct 1561 actccctccg tgttttttaa atgtaaaggc gtattgactt ttggacatgg cgttagacca 1621 ttcatctcat gc //