LOCUS AK066805 3000 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013078A14, full insert
sequence.
ACCESSION AK066805
VERSION AK066805.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3000)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3000
/clone="J013078A14"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 1763..2728
/db_xref="Osa1:LOC_Os02g53180"
/db_xref="RAP-DB:Os02g0771600"
/note="(RAP Annotation release2) Similar to
1-aminocyclopropane-1-carboxylate oxidase (Fragment)"
/note="(Rice Genome Annotation Project)
1-aminocyclopropane-1-carboxylate oxidase 1, putative,
expressed"
/note="mapping to R02-TIGRv4S1-001425F (Chr.2: short
arm=32552766, long arm=32556678, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG90130.1"
/translation="MASVASFPVINMENLETEERGAAMEVIRDACENWGFFEMLNHGI
AHELMDEVERVSKAHYANCREEKFKEFARRMLEAGEKGADVKGIDWESTFFVRHRPVS
NLADLPDVDDHYRQVMKQFASEIEKLSERVLDLLCENLGLEKGYLKKAFAGSNGPTFG
TKVSSYPPCPRPDLVDGLRAHTDAGGIILLFQDDQVSGLQLLKDGEWVDVPPMRHAIV
ANIGDQLEVITNGRYKSVMHRVLTRPDGNRMSIASFYNPGADAVIFPAPALAAADAAA
AAYPRFVFEDYMNLYVRHKFEAKEPRFEAMKSAAEVVHAAPIATA"
BASE COUNT 695 a 810 c 769 g 726 t
ORIGIN
1 gacacttcgc cggggctcca catctcctct cctcccacag tcggcggtcc tgcctctccc
61 catccggcgg cctcgagctt gagctcctct tcctcttctc tcctccgatg gctggcggcc
121 tcacctctcc ccccatccgg cggtcctctc ctcggtggag cctcgaatcg gacaacgtcg
181 accagatcga cacgacaagg aggttgaggc agatgtggat cgaggcggcc ttcgtcgggc
241 caccactgcg gacgggtcga ggtggccgtc gtcgagctgc tactgcacag gttgacaacg
301 acgatgagcg acggcttgta aatacatagt acaatatgta catgagcaat ccaggaggcg
361 actccaccag gtctgaacca ccttcctagc tcaccacctt gccaccatcg gcaacgtcac
421 ccacccactt ccgatgcctg ccctctcctc tcctctcaca ttctttttct ttctctctct
481 gcctaataca gatatttttc ttctatgaat tcaattcata ttttctcgat ccataaacac
541 tgacggcaag agcgagccat cacagacgac actcttgctc catgtgggca tcggttggtg
601 cctagagagc tgatttgata ggatgaggtt ggtcggtttg ttttgaacgt ggactaatca
661 acgtgaagca gggaagcctt tagaggaggt tggcttgttc ggtttagtag gtggttatag
721 aggtggtatt ggccggacac aatgtacggt tttttcctaa caaactaagc actgtatgtt
781 ttttttgcat aatgtatggt ttgatatttt ttttcttaaa atgttatatc ttctttaata
841 taataaattg ccacaccctt tttaaaaaac ctgatatgtg tccataggac ctagccatgt
901 gaagtctaca tttgacaaat caaattgatc aggtctgggc caggtgtact atgcccaaaa
961 ttctgtcatc atcaaatcca aaaagcaagg aacagtctct tatcgatctg tagttctcta
1021 cttaatagag ttgatcactt aggttaggta tatagaatag taaccaccac taccattata
1081 gtattacact atagtactac tacatcacaa aggcattaga cattaattag gagtaagagc
1141 aaatcttgtg gagaaccttt ttgtgactgt gtcgggtaac cggcatgaac tcaacctgcg
1201 gcgtgcacag gacacagtgt gatcagatca gataatcaga ttagcagctt agcttagctt
1261 agcttgctta cgtccacact actttactct ccgttggacc aaatcactaa actttgtcgt
1321 aaactcgtac tacctccgtg ccataataag tgtagccata agtttccgcg tccaactttg
1381 atcgtccgtc ttatttgaaa cttttttata attagtattt ttgttgttat gagatgataa
1441 aacatgaata gtactttact cgtgacttat gtttttaatt tttttaaaaa aattttcaaa
1501 taagacgaac ggttaaagtt agatgcggaa aaccatggct gcacttattt tgagatgtag
1561 gaagtaaggc ataccgcaca ccacgtcctg ggggtcaggc agtcagccta gtgaaaaaga
1621 taactgtgca agctagcttc tcgctctcgc gcctataaat tgggcgctcg ccgccggcct
1681 cagagtgcac acacagacac acagacgcac tcacacactc agcttaagcg agcgagcgag
1741 tgaacgagag agagagacag agatggcgag tgttgcctcc ttcccggtga tcaacatgga
1801 gaacctggag accgaggaga ggggcgcagc aatggaggtc atccgcgacg cctgcgagaa
1861 ctggggcttc ttcgagatgc tgaaccatgg catcgcgcac gagctgatgg acgaggtgga
1921 gcgggtgagc aaggcgcact acgccaactg ccgggaggag aagttcaagg agttcgcgcg
1981 gcggatgctg gaggccggcg agaagggcgc cgacgtgaag ggcatcgact gggagagcac
2041 cttcttcgtc cgccaccgcc ccgtctccaa cctcgccgac ctccccgacg tcgacgacca
2101 ctacaggcag gtgatgaagc aatttgcgtc ggagatcgag aagctctcgg agagggtgct
2161 ggacctgctg tgcgagaatc tgggcctgga gaagggttac ctgaagaagg ccttcgccgg
2221 gtcgaacggc ccaacgttcg gcaccaaggt gagcagctac ccgccgtgcc cgcgccccga
2281 tctcgtcgac ggcctccgcg cccacaccga cgccggtggc atcatcctgc tgttccagga
2341 cgaccaggtg agcggcctcc agctgctcaa ggacggggag tgggtggacg tgccgcccat
2401 gcgccacgcc atcgtcgcca acatcggcga ccagctggag gtgatcacca acggcaggta
2461 caagagcgtc atgcaccgcg tcctcacgcg ccccgacggc aaccgcatgt ccatcgcctc
2521 cttctacaac cccggcgccg acgccgtcat cttcccggcg cccgcgctcg ccgccgccga
2581 cgcggcggcg gccgcctacc cgaggttcgt gttcgaggac tacatgaacc tgtacgtgcg
2641 ccacaagttc gaggccaagg agccacgctt cgaggccatg aagtccgccg ccgaggtcgt
2701 ccacgcggcg cccatcgcca ccgcttgata aggatcagac ttcactagct acggctgcgc
2761 gtgccatgat ccagatatat gggatgtgta cggtagtgta cgtggtgctg tacatgccgt
2821 cccgtgtttt tctgcgtaat gtttttacgt actagactac tactagtgtg tgtacgtaac
2881 ctggggatgt aagtatcgcg tcaagtactc aagtgtgtgt aacgggcgct ctaatcgtat
2941 tgttctgtgc ttcaatggct accacgttag atgggccttg tgctaatgtt gttttatgct
//