LOCUS AK066418 3349 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013067H19, full insert
sequence.
ACCESSION AK066418
VERSION AK066418.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3349)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3349
/clone="J013067H19"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3349
/db_xref="Osa1:LOC_Os12g42310"
/note="(Rice Genome Annotation Project)
serine/threonine-protein phosphatase BSL2, putative,
expressed"
/note="mapping to R12-TIGRv4S1-000819R (Chr.12: short
arm=26273988, long arm=26282196, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 763 a 779 c 1010 g 797 t
ORIGIN
1 gattttccac tctcgccacc accactccgc gacaagctcg tgctcccccc caaatcccaa
61 atctcccagg ggcctcctcg atcgatccca tcccccccct cacttcgccg gcggcggctg
121 cggcggcgta agcggcgacg accggtggtg tggcgtgttc tacctagggt ttcggtgggg
181 ggaggaggga tggcagcggc ctcgccgcaa gtggcaagga gttgggagga gtaggcggag
241 ctaagagatt tttttgctct ctcgcttctt ctctgtgtgt gtgttgcgtg gtggggagga
301 agatctcgag cggttggaaa ccctagtggg gagggaggga gtgggcgggg gggatggacg
361 tggactcgag gatgacgacg gagtcggact ccgactcgga cgccgcggcg caggggggag
421 gaggaggagg gttcgggagc gagacctcct cggcgtcgcc ctcggcgccc gggacgccgg
481 cggctatggg ggcaggaggg ggagctgctc ctatcgctgc tgctgctatc gctgccgccg
541 cgtcggcggc ggtggtggcg ggcccgaggc ccgcgccggg gtacacggtg gtgaacgcgg
601 cgatggagaa gaaggaggac gggcccgggt gccggtgcgg ccacacgctc accgcggtgc
661 cggccgtcgg ggaggagggc gcgccggggt acgtggggcc gcggctgatc ctcttcggcg
721 gtgccaccgc gctcgagggg aactccgcca cgccgccatc ctcggccggg agcgccggaa
781 tccgtcttgc tggtgctact gcggatgtgc actgctacga tgtttcatcg aataagtgga
841 gcaggcttac tccagttggt gaacctcctt caccaagagc ggcacatgta gcgactgctg
901 ttggcaccat ggtggtcatt cagggtggga taggtcctgc tggtttatct gcagaagacc
961 ttcatgttct ggatcttaca caacaacgac cgcgatggca cagagtggtg gttcaagggc
1021 ctggccctgg tcctcgatat ggacatgtga tggctttggt tgggcagcgt ttcttgttga
1081 caatcggtgg aaatgatggg aagaggcccc tggctgatgt gtgggccctt gatacagcag
1141 ctaagccata tgagtggagg aaacttgaac cagaaggtga aggaccaccc ccatgcatgt
1201 atgcaactgc aagtgcccgt tctgatggac ttctattact ctgtggtggg agggatgcta
1261 atagtgtgcc cctagcaagt gcatatggcc ttgcaaaaca cagggatgga cgctgggagt
1321 gggcaatcgc ccctggtgtc tctccatcac ccagatatca acatgcagct gttttcgtca
1381 atgcacgact tcatgtctca ggaggggccc ttggaggcgg tcgcatggtt gaagactcct
1441 caagtgttgc agtgttggat actgctgctg gagtgtggtg tgatacaaaa tcagtagtta
1501 ctactccaag gacaggaaga tatagtgcag atgctgcagg cggtgatgct tctgtagagc
1561 ttacacgacg gtgcaggcat gcagctgctg cagttggtga tatgatatat gtttatggag
1621 gtctacgggg aggtgtgctg ctagatgacc ttcttgttgc cgaagatctt gctgctgctg
1681 aaacaacaaa tgcagcaaat caggcagctg caattgctgc agcctctgac atacaagctg
1741 gaagagaacc tggtaggtat gcctacaatg atgaacaaac agggcagcca gctacaataa
1801 catctcctga tggagctgtg gttcttggaa ctccagttgc tgctcccgtt aatggggaca
1861 tgtatactga tattagccct gagaacgctg tgatccaggg acaaaggaga atgagcaaag
1921 gtgttgatta tttggttgaa gcatctgctg cagaggctga ggcaatcagt gctactttag
1981 ctgctgtaaa agctcggcaa gttaatggtg aggcagagca ttcacctgac agggagcagt
2041 ctccagatgc cacaccaagt gtgaagcaaa atgcaagcct gataaaacca gactatgctc
2101 tttcaaataa ttcaacacca cctcctgggg ttcggttaca ccatagagca gttgtggtag
2161 cagcagaaac cggaggtgcc ttaggtggca tggttaggca gctctcaatt gaccagtttg
2221 aaaatgaagg aagaagggtc atctatggca ctcctgagag tgcaactgca gcaaggaagt
2281 tgctagatcg gcaaatgtct attaatagtg tacctaaaaa ggtaattgca tccctcttga
2341 aacctcgtgg ttggaagccc cctgtgcgaa ggcagttctt tttggactgc aatgagattg
2401 cagacctatg tgatagtgcg gaaagaatat tttcaagtga accaagtgtc ctacagctta
2461 aagctccaat taagatattt ggtgatttgc acggtcaatt tggtgaccta atgcgcttgt
2521 ttgatgagta cggtgctcct tcgacagctg gagacattgc ttacattgat tacctcttct
2581 tgggagatta cgtggatcgt ggtcagcata gtttggagac aatcactctt ctccttgcac
2641 ttaaggttga atatcctctt aatgtacatt tgattcgagg gaatcatgag gccgctgata
2701 tcaatgcttt gtttgggttc cgaatagagt gcatagagcg aatgggtgag cgtgatggga
2761 tctggacctg gcatcgcatg aataggctat ttaattggct tcctttggct gccctaatag
2821 agaagaaaat aatatgtatg catggtggta ttggccggtc tatcaatcat gttgaacaaa
2881 ttgagaatct tcaaagacca attaccatgg aagcaggctc ggttgttcta atggatcttc
2941 tgtggtctga tccaactgaa aatgatagtg ttgaaggact tagaccaaat gcccgtggcc
3001 caggccttgt tacctttggg ccggatcgtg ttatggagtt ctgcaacaac aatgacttac
3061 agttaattgt gcgagcacat gagtgtgtga tggatggttt tgagcgtttt gctcaaggtc
3121 acctaatcac tctcttctca gcaacaaatt actgtggtac ggcaaacaat gcgggtgcaa
3181 tcttggttct aggaagagat cttgtagtag ttccgaaact catccatcct ttgccgcctg
3241 ccattacatc tcccgagacc tctccagagc atcatcttga ggacacatgg atgcaggaac
3301 taaatgccaa caggccgcca actccaacaa ggggccgccc tcaagcagc
//