LOCUS       VVC12343.1               783 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans B-cell receptor CD22-like protein.
ACCESSION   BX284606-1467
PROTEIN_ID  VVC12343.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="igcm-2"
                     /locus_tag="CELE_SSSD1.1"
                     /standard_name="SSSD1.1b"
                     /note="Confirmed by transcript evidence"
                     /db_xref="WormBase:WBGene00020130"
     intron_pos      54:1 (1/17)
     intron_pos      103:1 (2/17)
     intron_pos      143:0 (3/17)
     intron_pos      187:1 (4/17)
     intron_pos      243:0 (5/17)
     intron_pos      281:1 (6/17)
     intron_pos      331:0 (7/17)
     intron_pos      368:1 (8/17)
     intron_pos      409:0 (9/17)
     intron_pos      450:0 (10/17)
     intron_pos      476:1 (11/17)
     intron_pos      540:1 (12/17)
     intron_pos      585:0 (13/17)
     intron_pos      630:1 (14/17)
     intron_pos      690:1 (15/17)
     intron_pos      710:2 (16/17)
     intron_pos      732:0 (17/17)
BEGIN
        1 MKAYWGKAGA PITLPCSISL FNEESFSLDW RKDGQLILSA FGQEQGHVTP TLQGRLARDG
       61 FLGITIHSVT DGDAGVYQCI VTKFSKQPTR PEKGLSAKLV VNVPPVIISP SKNAIIHKKV
      121 GADLIFECKA EGAPSPEITW SRNEQIISTS PVLTLSNLEE GDKGLYTCLA VNIEGNSTSS
      181 IDVRFTKATI LDLIPLNKTV IEGSNVFWHC HANAQATAIS YSWLFEKKPI KTTSLGLRSN
      241 IRSGDLSLQD VRKSDSGWYT CEAKNSAGET TSSTAYLHVF YPPEPLSSHQ PVQTVASGRN
      301 TTVSCDVIAN PTPTSYTWSK NGHYLPTQAS SHIIISYAKP GDGGIYGCQA DNIAGKGSIV
      361 ETHLIVAEPP VFTVAPPSEI KVRLGDQVSI PCQGFGDPMP IVYWIRDKKR INQSTLTFKK
      421 VEHLDHGAYE CVVANSVETI STRVMLLVEI TKPQMASSIK FTCLNSSSMR ISWTPGYNGG
      481 FDQTFAVHAQ NDVTLQWTSI KTSLNETILD HLEPFVSYRV SIESVNAKGS TNSTTYNRRS
      541 CTSLHAPDKL YFCGYNELCW TAAEGASSYR IESRTEPSKN FQPLAEVLET YYRLGKDVDE
      601 TKQTIFRVRS TRPSYPPSEP SNALRYGIAD NVDLPIFMLA AVFGLLFCFA CGLFAWRCFH
      661 NKNKKSKRRK SRSNSTPSKT YQDYGRFTYG DGSSSSQPGT ETYYEPSLRL LDDHEWRGPR
      721 DLEPVAVRYP PSLAELDYDI GEDHPIDDMF RDRYILGVQD PPAQLYQDLR LERLRREYKQ
      781 SQI
//