LOCUS VVC12343.1 783 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans B-cell receptor CD22-like protein. ACCESSION BX284606-1467 PROTEIN_ID VVC12343.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="igcm-2" /locus_tag="CELE_SSSD1.1" /standard_name="SSSD1.1b" /note="Confirmed by transcript evidence" /db_xref="WormBase:WBGene00020130" intron_pos 54:1 (1/17) intron_pos 103:1 (2/17) intron_pos 143:0 (3/17) intron_pos 187:1 (4/17) intron_pos 243:0 (5/17) intron_pos 281:1 (6/17) intron_pos 331:0 (7/17) intron_pos 368:1 (8/17) intron_pos 409:0 (9/17) intron_pos 450:0 (10/17) intron_pos 476:1 (11/17) intron_pos 540:1 (12/17) intron_pos 585:0 (13/17) intron_pos 630:1 (14/17) intron_pos 690:1 (15/17) intron_pos 710:2 (16/17) intron_pos 732:0 (17/17) BEGIN 1 MKAYWGKAGA PITLPCSISL FNEESFSLDW RKDGQLILSA FGQEQGHVTP TLQGRLARDG 61 FLGITIHSVT DGDAGVYQCI VTKFSKQPTR PEKGLSAKLV VNVPPVIISP SKNAIIHKKV 121 GADLIFECKA EGAPSPEITW SRNEQIISTS PVLTLSNLEE GDKGLYTCLA VNIEGNSTSS 181 IDVRFTKATI LDLIPLNKTV IEGSNVFWHC HANAQATAIS YSWLFEKKPI KTTSLGLRSN 241 IRSGDLSLQD VRKSDSGWYT CEAKNSAGET TSSTAYLHVF YPPEPLSSHQ PVQTVASGRN 301 TTVSCDVIAN PTPTSYTWSK NGHYLPTQAS SHIIISYAKP GDGGIYGCQA DNIAGKGSIV 361 ETHLIVAEPP VFTVAPPSEI KVRLGDQVSI PCQGFGDPMP IVYWIRDKKR INQSTLTFKK 421 VEHLDHGAYE CVVANSVETI STRVMLLVEI TKPQMASSIK FTCLNSSSMR ISWTPGYNGG 481 FDQTFAVHAQ NDVTLQWTSI KTSLNETILD HLEPFVSYRV SIESVNAKGS TNSTTYNRRS 541 CTSLHAPDKL YFCGYNELCW TAAEGASSYR IESRTEPSKN FQPLAEVLET YYRLGKDVDE 601 TKQTIFRVRS TRPSYPPSEP SNALRYGIAD NVDLPIFMLA AVFGLLFCFA CGLFAWRCFH 661 NKNKKSKRRK SRSNSTPSKT YQDYGRFTYG DGSSSSQPGT ETYYEPSLRL LDDHEWRGPR 721 DLEPVAVRYP PSLAELDYDI GEDHPIDDMF RDRYILGVQD PPAQLYQDLR LERLRREYKQ 781 SQI //