LOCUS VTW47610.1 911 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Suppressor of Constitutive Dauer
formation protein.
ACCESSION BX284606-3025
PROTEIN_ID VTW47610.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="scd-1"
/locus_tag="CELE_H20J18.1"
/standard_name="H20J18.1h"
/note="Confirmed by transcript evidence"
/db_xref="UniProtKB/TrEMBL:A0A4V0INN2"
/db_xref="WormBase:WBGene00004739"
intron_pos 21:0 (1/9)
intron_pos 328:2 (2/9)
intron_pos 587:1 (3/9)
intron_pos 632:0 (4/9)
intron_pos 677:0 (5/9)
intron_pos 764:2 (6/9)
intron_pos 795:0 (7/9)
intron_pos 850:1 (8/9)
intron_pos 875:0 (9/9)
BEGIN
1 MNVGNGINPV NHGITPAQMQ SLHSMGLNPA QLAMMMQLPN GVQLQQPQQS TANNPAAVSS
61 AQQIVNVQAM GHPPVPQPQQ HPLVQAQQAQ AQAHAQAQAQ AQAQVQAQAH QAQQAQAHAQ
121 AQAQAQAQAQ AQVQQQHQLQ AQAHAQQHLQ AAQQAQQAQQ AQQLQASQQQ ALQQLQAQQQ
181 AQQQAQQQAQ QQAQQQAQQQ AQQQGGQPQA SQVAVSSAQQ PQAQPQNSQT AQLLQQIQAM
241 QAAQAAQQAA QQAAAHQMQQ SQFVNAIANP PCPPPPPGIP SMPWPISTPV CHVPYFDVNM
301 YRSVNIEAMP SHDASGMDLP LIDITTLRFF FNLGVQQSRN LIAARQHQQV QHQSQNQPGQ
361 PPAQQPATSI QESLSAPPGA SPNLIALVNQ PNGGQVPNQN TIEQLNALIG QQHILRQAQQ
421 LQGPQGQAQN QMQQQLIQQQ LNQILARNQQ QQQQQMQQQL QQQASNNALQ QQLQQLVEQQ
481 RQQQQQQQQS VQNAQIAAAA TAAASTSTPN SQDRKIPHTE LVNASGQSIV GLSSTPGFQV
541 STPGLTQSAT TPIPTSITPN AQQQFQKHFE GQTMLLQHAL LQHANNSTNS ASKATLHDIR
601 FQAMAQQQQQ VAASGVGQGQ TTLHPFIRPN DTTRQAQLVN GVGDQTVSPR PIPLDPSPPR
661 ATSGGSTAAS TASWAKEPII NVEDDKPSTS SGPSTTTASH PVNPIGIANP LSAASAAAGF
721 HTTKTSTAVS GNGNPGSNVA TPVLSIIQMS EDHFTDTFRK SDQKMHQGQA GNINGQAVRS
781 PKSDGNDSDE RPPAVDFAAR PIDPIFKDAR EDMKAKDVRT LEHAVKRPFS NNMATHAKNV
841 KESPSPQRHP GQSPHQIPSP MRQGAHNPLG INRSIPDAAP PKIEADSSRS PSEDLEEDGG
901 GKRLRIATDE E
//