LOCUS       VTW47610.1               911 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Suppressor of Constitutive Dauer
            formation protein.
ACCESSION   BX284606-3025
PROTEIN_ID  VTW47610.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="scd-1"
                     /locus_tag="CELE_H20J18.1"
                     /standard_name="H20J18.1h"
                     /note="Confirmed by transcript evidence"
                     /db_xref="UniProtKB/TrEMBL:A0A4V0INN2"
                     /db_xref="WormBase:WBGene00004739"
     intron_pos      21:0 (1/9)
     intron_pos      328:2 (2/9)
     intron_pos      587:1 (3/9)
     intron_pos      632:0 (4/9)
     intron_pos      677:0 (5/9)
     intron_pos      764:2 (6/9)
     intron_pos      795:0 (7/9)
     intron_pos      850:1 (8/9)
     intron_pos      875:0 (9/9)
BEGIN
        1 MNVGNGINPV NHGITPAQMQ SLHSMGLNPA QLAMMMQLPN GVQLQQPQQS TANNPAAVSS
       61 AQQIVNVQAM GHPPVPQPQQ HPLVQAQQAQ AQAHAQAQAQ AQAQVQAQAH QAQQAQAHAQ
      121 AQAQAQAQAQ AQVQQQHQLQ AQAHAQQHLQ AAQQAQQAQQ AQQLQASQQQ ALQQLQAQQQ
      181 AQQQAQQQAQ QQAQQQAQQQ AQQQGGQPQA SQVAVSSAQQ PQAQPQNSQT AQLLQQIQAM
      241 QAAQAAQQAA QQAAAHQMQQ SQFVNAIANP PCPPPPPGIP SMPWPISTPV CHVPYFDVNM
      301 YRSVNIEAMP SHDASGMDLP LIDITTLRFF FNLGVQQSRN LIAARQHQQV QHQSQNQPGQ
      361 PPAQQPATSI QESLSAPPGA SPNLIALVNQ PNGGQVPNQN TIEQLNALIG QQHILRQAQQ
      421 LQGPQGQAQN QMQQQLIQQQ LNQILARNQQ QQQQQMQQQL QQQASNNALQ QQLQQLVEQQ
      481 RQQQQQQQQS VQNAQIAAAA TAAASTSTPN SQDRKIPHTE LVNASGQSIV GLSSTPGFQV
      541 STPGLTQSAT TPIPTSITPN AQQQFQKHFE GQTMLLQHAL LQHANNSTNS ASKATLHDIR
      601 FQAMAQQQQQ VAASGVGQGQ TTLHPFIRPN DTTRQAQLVN GVGDQTVSPR PIPLDPSPPR
      661 ATSGGSTAAS TASWAKEPII NVEDDKPSTS SGPSTTTASH PVNPIGIANP LSAASAAAGF
      721 HTTKTSTAVS GNGNPGSNVA TPVLSIIQMS EDHFTDTFRK SDQKMHQGQA GNINGQAVRS
      781 PKSDGNDSDE RPPAVDFAAR PIDPIFKDAR EDMKAKDVRT LEHAVKRPFS NNMATHAKNV
      841 KESPSPQRHP GQSPHQIPSP MRQGAHNPLG INRSIPDAAP PKIEADSSRS PSEDLEEDGG
      901 GKRLRIATDE E
//