LOCUS VTW47589.1 1017 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Nucleolar protein 16 protein.
ACCESSION BX284606-2248
PROTEIN_ID VTW47589.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="F49E2.5"
/locus_tag="CELE_F49E2.5"
/standard_name="F49E2.5s"
/note="Confirmed by transcript evidence"
/db_xref="UniProtKB/TrEMBL:A0A4V0INR9"
/db_xref="WormBase:WBGene00009888"
intron_pos 37:2 (1/17)
intron_pos 67:0 (2/17)
intron_pos 211:0 (3/17)
intron_pos 285:0 (4/17)
intron_pos 329:0 (5/17)
intron_pos 470:0 (6/17)
intron_pos 524:0 (7/17)
intron_pos 540:0 (8/17)
intron_pos 570:0 (9/17)
intron_pos 593:0 (10/17)
intron_pos 656:0 (11/17)
intron_pos 708:0 (12/17)
intron_pos 849:1 (13/17)
intron_pos 896:0 (14/17)
intron_pos 936:0 (15/17)
intron_pos 966:0 (16/17)
intron_pos 991:0 (17/17)
BEGIN
1 MRSPKSVRRP HIRQQLTNRR KNLGRVAKSQ RNQFRQWLLT AVLPNSINDQ RKEAFASLEL
61 TEQPQQVEKV KKSEKKKAQK QIAKDHEAEQ KVNAKKAAEK EARRAEAEAK KRAAQEEEHK
121 QWKAEQERIQ KEQEKKEADL KKLQAEKKKE KAVKAEKAEK AEKTKKASTP APVEEEIVVK
181 KVANDRSAAP APEPKTPTNT PAEPAEQVQE ITGKKNKKNK KKSESEATAA PASVEQVVEQ
241 PKVVTEEPHQ QAAPQEKKNK KNKRKSESEN VPAASETPVE PVVESTTPPA TENKKKNKKD
301 KKKSESEKVT EQPVESAPAP PQVEQVVETT PPASENKKKN KKDKKKSESE KAVEEPVQAA
361 PSSKKPTADD SMDFLDFVTA KPDRSEVAAP VEVAKVDEST AVTSENRKKN KKDKKKSESE
421 KAVEEPVQAA PTSKKPTADD SMDFLDFVTA KEERVEEVAP VQEQVKEQKK SKKSKKTSES
481 ESKRPTADDS MDFLDFVTAK PEKPEQVVEE QPVVQEVPKP EEKASKKNKK NKRKSESEKK
541 VEKPVAPVSK KPTADDNMDF LDFVTAKPEK TESVEEHIEA PMIVEPVHAE NETAAAAGGK
601 KKNKKNKNKK NSESESTPAA EPVKEVTPEI VEEVFEKKTI TPSTAAAAAP APGSKKNKKN
661 KKNSESESAP AAEPVKEVTP EIVEEVFEKK TVTPSTEAAA APASASKKNK KNKKGSGISE
721 SHDTAPAPTV EIPQTTEGGK GSPGSDKENS GSAVNGSAKK QMSVEELDYG VPGQTTDTTT
781 DKKNKKKNKK GKNSNSISEN AQVIAHLEQD HLDQMADDEV QAITGAAGSH SPPIQVHEVT
841 SSEQHSNGVE KNTTIEITQA VDGTDMSQTQ FQKNVEKLVQ ATLAKHDIVE IDPTVKLRID
901 AQLIKLSEKK APAVVMEHVN YIKPLPMELH VSRPSTPSRD RVYKLLPKDI IFCAGLMDSH
961 GENYAAMAAD ERNIFKDTSR ALQRKIRIFK ESPHYHTYLR AKEENRPIEE VIAEAQH
//