LOCUS VTW47589.1 1017 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Nucleolar protein 16 protein. ACCESSION BX284606-2248 PROTEIN_ID VTW47589.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="F49E2.5" /locus_tag="CELE_F49E2.5" /standard_name="F49E2.5s" /note="Confirmed by transcript evidence" /db_xref="UniProtKB/TrEMBL:A0A4V0INR9" /db_xref="WormBase:WBGene00009888" intron_pos 37:2 (1/17) intron_pos 67:0 (2/17) intron_pos 211:0 (3/17) intron_pos 285:0 (4/17) intron_pos 329:0 (5/17) intron_pos 470:0 (6/17) intron_pos 524:0 (7/17) intron_pos 540:0 (8/17) intron_pos 570:0 (9/17) intron_pos 593:0 (10/17) intron_pos 656:0 (11/17) intron_pos 708:0 (12/17) intron_pos 849:1 (13/17) intron_pos 896:0 (14/17) intron_pos 936:0 (15/17) intron_pos 966:0 (16/17) intron_pos 991:0 (17/17) BEGIN 1 MRSPKSVRRP HIRQQLTNRR KNLGRVAKSQ RNQFRQWLLT AVLPNSINDQ RKEAFASLEL 61 TEQPQQVEKV KKSEKKKAQK QIAKDHEAEQ KVNAKKAAEK EARRAEAEAK KRAAQEEEHK 121 QWKAEQERIQ KEQEKKEADL KKLQAEKKKE KAVKAEKAEK AEKTKKASTP APVEEEIVVK 181 KVANDRSAAP APEPKTPTNT PAEPAEQVQE ITGKKNKKNK KKSESEATAA PASVEQVVEQ 241 PKVVTEEPHQ QAAPQEKKNK KNKRKSESEN VPAASETPVE PVVESTTPPA TENKKKNKKD 301 KKKSESEKVT EQPVESAPAP PQVEQVVETT PPASENKKKN KKDKKKSESE KAVEEPVQAA 361 PSSKKPTADD SMDFLDFVTA KPDRSEVAAP VEVAKVDEST AVTSENRKKN KKDKKKSESE 421 KAVEEPVQAA PTSKKPTADD SMDFLDFVTA KEERVEEVAP VQEQVKEQKK SKKSKKTSES 481 ESKRPTADDS MDFLDFVTAK PEKPEQVVEE QPVVQEVPKP EEKASKKNKK NKRKSESEKK 541 VEKPVAPVSK KPTADDNMDF LDFVTAKPEK TESVEEHIEA PMIVEPVHAE NETAAAAGGK 601 KKNKKNKNKK NSESESTPAA EPVKEVTPEI VEEVFEKKTI TPSTAAAAAP APGSKKNKKN 661 KKNSESESAP AAEPVKEVTP EIVEEVFEKK TVTPSTEAAA APASASKKNK KNKKGSGISE 721 SHDTAPAPTV EIPQTTEGGK GSPGSDKENS GSAVNGSAKK QMSVEELDYG VPGQTTDTTT 781 DKKNKKKNKK GKNSNSISEN AQVIAHLEQD HLDQMADDEV QAITGAAGSH SPPIQVHEVT 841 SSEQHSNGVE KNTTIEITQA VDGTDMSQTQ FQKNVEKLVQ ATLAKHDIVE IDPTVKLRID 901 AQLIKLSEKK APAVVMEHVN YIKPLPMELH VSRPSTPSRD RVYKLLPKDI IFCAGLMDSH 961 GENYAAMAAD ERNIFKDTSR ALQRKIRIFK ESPHYHTYLR AKEENRPIEE VIAEAQH //