LOCUS VTW47550.1 1605 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans EGF-like domain-containing protein protein.
ACCESSION BX284606-1246
PROTEIN_ID VTW47550.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="lgx-1"
/locus_tag="CELE_C54G7.3"
/standard_name="C54G7.3i"
/note="Confirmed by transcript evidence"
/db_xref="UniProtKB/TrEMBL:A0A4V0IND1"
/db_xref="WormBase:WBGene00002983"
intron_pos 16:1 (1/29)
intron_pos 53:2 (2/29)
intron_pos 92:1 (3/29)
intron_pos 161:0 (4/29)
intron_pos 295:1 (5/29)
intron_pos 346:1 (6/29)
intron_pos 392:1 (7/29)
intron_pos 428:0 (8/29)
intron_pos 531:1 (9/29)
intron_pos 575:1 (10/29)
intron_pos 602:1 (11/29)
intron_pos 631:0 (12/29)
intron_pos 679:1 (13/29)
intron_pos 729:1 (14/29)
intron_pos 759:0 (15/29)
intron_pos 799:2 (16/29)
intron_pos 902:1 (17/29)
intron_pos 939:1 (18/29)
intron_pos 991:0 (19/29)
intron_pos 1018:1 (20/29)
intron_pos 1107:1 (21/29)
intron_pos 1156:1 (22/29)
intron_pos 1201:1 (23/29)
intron_pos 1247:1 (24/29)
intron_pos 1289:2 (25/29)
intron_pos 1328:2 (26/29)
intron_pos 1380:0 (27/29)
intron_pos 1468:0 (28/29)
intron_pos 1544:0 (29/29)
BEGIN
1 MRVLLAISVI YHITIAQQVG INVPCNKELD GLLTADPDGD ERAFMSCQGV GVGTIGFWER
61 KLCPNNMVFD FINQHCKEQK KKARKQQNLS IAILNNSCAN GETCIGGSVC DLDTLRCMCP
121 YGTTPKLDTL SCESSQPPFV SATVDGPAQF FNSFSGGNGN RNNQNNGFMP FGQPSELPDF
181 QPNNNFKYGN NFGQNQNSNN NNNDFNWNPN FNWNNNQNNN NNNAPNKQAP MNNAGVGATT
241 TPDFNPFQPN PNQQFVFNFN KNQGGQNNQN NHVNNNNHNQ NIPVLESKPK VATLAIPGAS
301 CKSNEICVGG SICTLPIGIC LCPGDLEARE GECVLPAAST ISVQKVGIGA LCSDLAECDH
361 GSTCVMGRCT CVSPLVQHEG KCVLRQQQKI VVQVMTPPPT LPPVQVPIQT LPPQTRPPQL
421 PPVQITQPPI QTPVQPIFFQ TTRPPMPTYA TTPATTQFIP KQIYTTPPQM PKNSIKINQM
481 KIGGSKQAGV GVRCSLNTDC MIGAYCNGNT NPPSCQCLST HVNIEGRCEK VIYPGQVGCR
541 SDLQCHAAHS GTHCIDRICV CPEGQRAVDQ TCVSASEPVT SPPGGSCSNL RECTGGSVCR
601 EGWCICPDPS MIVNRGICIQ SGPKPTLPPR TPIPQVPLPP QLPISVHVPQ VTITKAQPFI
661 TEAPLAPQGK KIVPGGRCGP IDVCVGGSNC IEGFCLCPAG QQPSNSGRCE KFTTTSRQTT
721 LPSTTTTQAT TARLYSKPGE SCTQGQTCVG GSACSFRKLC ECPQDKSEIS QGQCVTPRKL
781 EVVPGASCNA NTVCTKGSTC ESGLCRCQPG YIAVSGNCVA LPMSTTPKMR VIAKPLESCE
841 NGETCEGGSN CDYDTGICMC PPGQIVFNVQ CMPPPTQPQI TTRVTTPVKA APVVTPKPIH
901 STDCEIDANC GENKICVSGK CKCKPGFVDN SGTCEPLEGI RGRSLRYGQA CDRYQDKCIN
961 GAKCIDKICK CAPGFLLAPN GWCEGFDLAK AIEINKQSIG TTPPVKANRV IQTKMQQVYT
1021 TSSTISSTTT SPAPTQKPRI VPKDFPTPPS NIFGFPDRRT TKIVPKVAAV GSACRPIDIC
1081 LGESVCTNGF CHCPENYIRQ NGQCISKECK HKVAKVGETC KNGEICAGGS ICDYDRKRCI
1141 CAAQHVAIRG ICKQKSAPAF AAPGDTCSMR EKCTGGATCF EGMCTCDDHH FAEDGYCRPI
1201 EARSSKVQFV NGAGLRFSSM QVPNRQRAQA CNEAECKLPN CFCTENGRRA PGGLRPDETP
1261 QFVVLTFDDA VNGKTFSDYK KLFENDVLKN PNGCDVKATF FISHEWTNYD AVNWLVQKNM
1321 EIASNSISHE SLENANTNRW LNEMDGQRRI LAKFGGAPEE EIVGIRSPQL ALGGDNQFEM
1381 MIGAEFLWDN SMSANPGIHG EPFWPQTMDY QVAWDCNEAS CPKSSFPGVW SVPLNQFYGS
1441 YMSQIDSFRR SSMLRAAVDL NNTVDELEEI ITRNFERSYS ANRAPYVLSL NADFLQLGGH
1501 NKGMKAVQKF LNRMSAQKDV YIVTIKQLID WMKRPVPISE MKSSKAVGCP ITLSFNRNPS
1561 LSTCDIPNKC LYSTPSLSSQ EHQFLTCLPC PTMYPWLENP AGGIV
//