LOCUS VTW47550.1 1605 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans EGF-like domain-containing protein protein. ACCESSION BX284606-1246 PROTEIN_ID VTW47550.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="lgx-1" /locus_tag="CELE_C54G7.3" /standard_name="C54G7.3i" /note="Confirmed by transcript evidence" /db_xref="UniProtKB/TrEMBL:A0A4V0IND1" /db_xref="WormBase:WBGene00002983" intron_pos 16:1 (1/29) intron_pos 53:2 (2/29) intron_pos 92:1 (3/29) intron_pos 161:0 (4/29) intron_pos 295:1 (5/29) intron_pos 346:1 (6/29) intron_pos 392:1 (7/29) intron_pos 428:0 (8/29) intron_pos 531:1 (9/29) intron_pos 575:1 (10/29) intron_pos 602:1 (11/29) intron_pos 631:0 (12/29) intron_pos 679:1 (13/29) intron_pos 729:1 (14/29) intron_pos 759:0 (15/29) intron_pos 799:2 (16/29) intron_pos 902:1 (17/29) intron_pos 939:1 (18/29) intron_pos 991:0 (19/29) intron_pos 1018:1 (20/29) intron_pos 1107:1 (21/29) intron_pos 1156:1 (22/29) intron_pos 1201:1 (23/29) intron_pos 1247:1 (24/29) intron_pos 1289:2 (25/29) intron_pos 1328:2 (26/29) intron_pos 1380:0 (27/29) intron_pos 1468:0 (28/29) intron_pos 1544:0 (29/29) BEGIN 1 MRVLLAISVI YHITIAQQVG INVPCNKELD GLLTADPDGD ERAFMSCQGV GVGTIGFWER 61 KLCPNNMVFD FINQHCKEQK KKARKQQNLS IAILNNSCAN GETCIGGSVC DLDTLRCMCP 121 YGTTPKLDTL SCESSQPPFV SATVDGPAQF FNSFSGGNGN RNNQNNGFMP FGQPSELPDF 181 QPNNNFKYGN NFGQNQNSNN NNNDFNWNPN FNWNNNQNNN NNNAPNKQAP MNNAGVGATT 241 TPDFNPFQPN PNQQFVFNFN KNQGGQNNQN NHVNNNNHNQ NIPVLESKPK VATLAIPGAS 301 CKSNEICVGG SICTLPIGIC LCPGDLEARE GECVLPAAST ISVQKVGIGA LCSDLAECDH 361 GSTCVMGRCT CVSPLVQHEG KCVLRQQQKI VVQVMTPPPT LPPVQVPIQT LPPQTRPPQL 421 PPVQITQPPI QTPVQPIFFQ TTRPPMPTYA TTPATTQFIP KQIYTTPPQM PKNSIKINQM 481 KIGGSKQAGV GVRCSLNTDC MIGAYCNGNT NPPSCQCLST HVNIEGRCEK VIYPGQVGCR 541 SDLQCHAAHS GTHCIDRICV CPEGQRAVDQ TCVSASEPVT SPPGGSCSNL RECTGGSVCR 601 EGWCICPDPS MIVNRGICIQ SGPKPTLPPR TPIPQVPLPP QLPISVHVPQ VTITKAQPFI 661 TEAPLAPQGK KIVPGGRCGP IDVCVGGSNC IEGFCLCPAG QQPSNSGRCE KFTTTSRQTT 721 LPSTTTTQAT TARLYSKPGE SCTQGQTCVG GSACSFRKLC ECPQDKSEIS QGQCVTPRKL 781 EVVPGASCNA NTVCTKGSTC ESGLCRCQPG YIAVSGNCVA LPMSTTPKMR VIAKPLESCE 841 NGETCEGGSN CDYDTGICMC PPGQIVFNVQ CMPPPTQPQI TTRVTTPVKA APVVTPKPIH 901 STDCEIDANC GENKICVSGK CKCKPGFVDN SGTCEPLEGI RGRSLRYGQA CDRYQDKCIN 961 GAKCIDKICK CAPGFLLAPN GWCEGFDLAK AIEINKQSIG TTPPVKANRV IQTKMQQVYT 1021 TSSTISSTTT SPAPTQKPRI VPKDFPTPPS NIFGFPDRRT TKIVPKVAAV GSACRPIDIC 1081 LGESVCTNGF CHCPENYIRQ NGQCISKECK HKVAKVGETC KNGEICAGGS ICDYDRKRCI 1141 CAAQHVAIRG ICKQKSAPAF AAPGDTCSMR EKCTGGATCF EGMCTCDDHH FAEDGYCRPI 1201 EARSSKVQFV NGAGLRFSSM QVPNRQRAQA CNEAECKLPN CFCTENGRRA PGGLRPDETP 1261 QFVVLTFDDA VNGKTFSDYK KLFENDVLKN PNGCDVKATF FISHEWTNYD AVNWLVQKNM 1321 EIASNSISHE SLENANTNRW LNEMDGQRRI LAKFGGAPEE EIVGIRSPQL ALGGDNQFEM 1381 MIGAEFLWDN SMSANPGIHG EPFWPQTMDY QVAWDCNEAS CPKSSFPGVW SVPLNQFYGS 1441 YMSQIDSFRR SSMLRAAVDL NNTVDELEEI ITRNFERSYS ANRAPYVLSL NADFLQLGGH 1501 NKGMKAVQKF LNRMSAQKDV YIVTIKQLID WMKRPVPISE MKSSKAVGCP ITLSFNRNPS 1561 LSTCDIPNKC LYSTPSLSSQ EHQFLTCLPC PTMYPWLENP AGGIV //