LOCUS UJP41290.1 454 aa PRT BCT 25-JAN-2022
DEFINITION Cellulomonas palmilytica diaminopimelate decarboxylase protein.
ACCESSION CP062221-1504
PROTEIN_ID UJP41290.1
SOURCE Cellulomonas palmilytica
ORGANISM Cellulomonas palmilytica
Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae;
Cellulomonas.
REFERENCE 1 (bases 1 to 3834012)
AUTHORS Siriatcharanon,A.-k., Sutheeworapong,S., Pason,P., Waeonukul,R.,
Kosugi,A., Ratanakhanokchai,K. and Tachaapaikoon,C.
TITLE Cellulomonas coenopalmateriei, sp. nov., a novel species of genus
Cellulomonas for degradation of raw lignocellulose biomass; oil
palm empty fruit bunch
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3834012)
AUTHORS Siriatcharanon,A.-k., Sutheeworapong,S., Pason,P., Waeonukul,R.,
Kosugi,A., Ratanakhanokchai,K. and Tachaapaikoon,C.
TITLE Direct Submission
JOURNAL Submitted (16-SEP-2020) Pilot Plant Development and Training
Institute, King Mongkut's University of Technology Thonburi,
Bangkuntien-Chaitalay, Bangkok 10150, Thailand
COMMENT Bacteria and source DNA available from Enzyme Technology
Laboratory, Pilot Plant Development and Training Institute, King
Mongkut's University of Technology Thonburi.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: 19-MAY-2020
Assembly Method :: unicycler v. v0.4.8
Assembly Name :: EW123_hybrid
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 10.0x
Sequencing Technology :: Oxford Nanopore MinION; Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 09/30/2020 19:03:08
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.13
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 3,454
CDSs (total) :: 3,400
Genes (coding) :: 3,351
CDSs (with protein) :: 3,351
Genes (RNA) :: 54
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 3
Pseudo Genes (total) :: 49
CDSs (without protein) :: 49
Pseudo Genes (ambiguous residues) :: 0 of 49
Pseudo Genes (frameshifted) :: 8 of 49
Pseudo Genes (incomplete) :: 41 of 49
Pseudo Genes (internal stop) :: 2 of 49
Pseudo Genes (multiple problems) :: 2 of 49
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Cellulomonas palmilytica"
/mol_type="genomic DNA"
/strain="EW123"
/isolation_source="Earthworm bio-fertilizer soil"
/type_material="type strain of Cellulomonas palmilytica"
/db_xref="taxon:2608402"
/country="Thailand: Bangkok"
/lat_lon="13.6771 N 100.4591 E"
/collection_date="Nov-2015"
/collected_by="Enzyme Technology Laboratory, KMUTT"
protein /gene="lysA"
/locus_tag="F1D97_07630"
/EC_number="4.1.1.20"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_013884498.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MTTSIPGEPW STGVARDGSG ALVVAGVPVA RLADEVGTPA YVLDEADLRA RAAGYRRAFT
61 AAFAEVGAGV DVYYAGKAFL SVAVARWVHD EGLRVDTASG GELAVALRAG VPGADIGLHG
121 NNKSDDELAL ALDNGVGRII VDSLVEVERL AALVQARGGD PAPVMVRVTT GVHAGGHEYI
181 STAHEDQKFG LSVTARDGQD SPAMTALLAV LDHPELRLLG IHSHIGSQIL DPSGFEVAAR
241 VVLELRAELA RRTGVLVEEV DLGGGYGIAY LPGEVALDPD RIAKDVASSV AAAAADLGTP
301 LPRFSIEPGR AVVGPAGFTL YTVGTVKPVR VDDATERLYV SVDGGMSDNI RPALYGARYH
361 AEVVGRLSSA PTVLARVVGK HCESGDIVVH EVQLPADVRA GDLLAVAATG AYGRSMASNY
421 NLLTRPPVVA VRDGEVRTLL RRETVDDLLA LDQG
//