LOCUS UJP41290.1 454 aa PRT BCT 25-JAN-2022 DEFINITION Cellulomonas palmilytica diaminopimelate decarboxylase protein. ACCESSION CP062221-1504 PROTEIN_ID UJP41290.1 SOURCE Cellulomonas palmilytica ORGANISM Cellulomonas palmilytica Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas. REFERENCE 1 (bases 1 to 3834012) AUTHORS Siriatcharanon,A.-k., Sutheeworapong,S., Pason,P., Waeonukul,R., Kosugi,A., Ratanakhanokchai,K. and Tachaapaikoon,C. TITLE Cellulomonas coenopalmateriei, sp. nov., a novel species of genus Cellulomonas for degradation of raw lignocellulose biomass; oil palm empty fruit bunch JOURNAL Unpublished REFERENCE 2 (bases 1 to 3834012) AUTHORS Siriatcharanon,A.-k., Sutheeworapong,S., Pason,P., Waeonukul,R., Kosugi,A., Ratanakhanokchai,K. and Tachaapaikoon,C. TITLE Direct Submission JOURNAL Submitted (16-SEP-2020) Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi, Bangkuntien-Chaitalay, Bangkok 10150, Thailand COMMENT Bacteria and source DNA available from Enzyme Technology Laboratory, Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 19-MAY-2020 Assembly Method :: unicycler v. v0.4.8 Assembly Name :: EW123_hybrid Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 10.0x Sequencing Technology :: Oxford Nanopore MinION; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 09/30/2020 19:03:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.13 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 3,454 CDSs (total) :: 3,400 Genes (coding) :: 3,351 CDSs (with protein) :: 3,351 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 49 CDSs (without protein) :: 49 Pseudo Genes (ambiguous residues) :: 0 of 49 Pseudo Genes (frameshifted) :: 8 of 49 Pseudo Genes (incomplete) :: 41 of 49 Pseudo Genes (internal stop) :: 2 of 49 Pseudo Genes (multiple problems) :: 2 of 49 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Cellulomonas palmilytica" /mol_type="genomic DNA" /strain="EW123" /isolation_source="Earthworm bio-fertilizer soil" /type_material="type strain of Cellulomonas palmilytica" /db_xref="taxon:2608402" /country="Thailand: Bangkok" /lat_lon="13.6771 N 100.4591 E" /collection_date="Nov-2015" /collected_by="Enzyme Technology Laboratory, KMUTT" protein /gene="lysA" /locus_tag="F1D97_07630" /EC_number="4.1.1.20" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_013884498.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MTTSIPGEPW STGVARDGSG ALVVAGVPVA RLADEVGTPA YVLDEADLRA RAAGYRRAFT 61 AAFAEVGAGV DVYYAGKAFL SVAVARWVHD EGLRVDTASG GELAVALRAG VPGADIGLHG 121 NNKSDDELAL ALDNGVGRII VDSLVEVERL AALVQARGGD PAPVMVRVTT GVHAGGHEYI 181 STAHEDQKFG LSVTARDGQD SPAMTALLAV LDHPELRLLG IHSHIGSQIL DPSGFEVAAR 241 VVLELRAELA RRTGVLVEEV DLGGGYGIAY LPGEVALDPD RIAKDVASSV AAAAADLGTP 301 LPRFSIEPGR AVVGPAGFTL YTVGTVKPVR VDDATERLYV SVDGGMSDNI RPALYGARYH 361 AEVVGRLSSA PTVLARVVGK HCESGDIVVH EVQLPADVRA GDLLAVAATG AYGRSMASNY 421 NLLTRPPVVA VRDGEVRTLL RRETVDDLLA LDQG //