LOCUS       SIT60429.1               905 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Ligand-Gated ion Channel protein.
ACCESSION   BX284602-1295
PROTEIN_ID  SIT60429.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 15279421)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 15279421)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 15279421)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="II"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="lgc-45"
                     /locus_tag="CELE_W10G11.16"
                     /standard_name="W10G11.16c"
                     /note="Product from WormBase gene class lgc"
                     /note="Confirmed by transcript evidence"
                     /db_xref="GOA:A0A1N7SYR3"
                     /db_xref="InterPro:IPR006028"
                     /db_xref="InterPro:IPR006029"
                     /db_xref="InterPro:IPR006201"
                     /db_xref="InterPro:IPR006202"
                     /db_xref="InterPro:IPR018000"
                     /db_xref="InterPro:IPR036719"
                     /db_xref="InterPro:IPR036734"
                     /db_xref="UniProtKB/TrEMBL:A0A1N7SYR3"
                     /db_xref="WormBase:WBGene00021146"
     intron_pos      31:0 (1/14)
     intron_pos      85:0 (2/14)
     intron_pos      126:0 (3/14)
     intron_pos      193:0 (4/14)
     intron_pos      299:2 (5/14)
     intron_pos      387:0 (6/14)
     intron_pos      429:2 (7/14)
     intron_pos      484:1 (8/14)
     intron_pos      530:2 (9/14)
     intron_pos      580:0 (10/14)
     intron_pos      653:2 (11/14)
     intron_pos      681:1 (12/14)
     intron_pos      763:0 (13/14)
     intron_pos      805:0 (14/14)
BEGIN
        1 MDYNLSTDDF EECATWQKYW NLTAELEKNK DRNLSSSGND TEDVVSEIDE LKETEENLKQ
       61 TELVNTKNRL KALGLNPELL VAYKAVGLVY REICGNHGRT LWYRTREDAS LIGVDSFSPI
      121 CEPFKEQLNP DESTLSQLAL KLNILIQNVT EGFEPALRRG GGGNTTSTED GEIQNSTMLT
      181 SKEPEAVTSD DSIVLLPSST DSSKEQLTTS HPAHHHHHHH HHQHHQTPPA PSTETPETPT
      241 TAQQADYEIN DDEYDNRVFS SGLPPEEPTT TTEPTTTTTE SISEVEVYDD DVWDYRDMEK
      301 RFKVRHQVVF DGNEIGEDEL DGSFPSIHQA SNRKRRRHVV LKTKIRRRRR RKRAAGSDEE
      361 DEKKSSETVI DVHQDSGEND EDWLNVRQVI KTTDGETTVA IIEERSHLLD GNSTDVRAWI
      421 EIDASDLINP TLLISSPEAV AALGLEVEAT AFQRFENVGL YLPGICSEYV PKAIDEFNSS
      481 SFEGIEIEGP IGVNITALEL AGVNLTSLAD KLRNDTEVDE ILSRTNGSTK NLGGSFILPV
      541 LNKNQYDPFS APIVFQGSAV VVRFGIYIES MSNFQTSTMD YDMDIYLMMS WRDARLVNPY
      601 DKPILVKEED ILEKIWRPDP FFANAKEAEF HEVTFLNFLM RIFPDGLVLY ETRVKIKPSC
      661 NLILCKYPHD KQTCDLLIKS FAYPVETVRF EWFTRRKDAI DKNPDVKLPE LYIDRYETTT
      721 CPNERKSGAF SCLRAVFRLK RDVGFHIAQT YIPTSLALMF SWVGVWLPEE FMEGRIGVAI
      781 TVLLTLSTES AGAREHLPSV SYLKAIDLWF GFITGFVFFT LLQTLFVIGF DKRANQLKKW
      841 AGRKTADITE EIREALLQKA TRYHKTGRYL DNFCRVFYPL SFILFLLMYY FVFTEGRQDD
      901 CMNRR
//